Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq120 156 3e-33 seq42 140 2e-28 seq29 134 1e-26 seq26 134 1e-26 seq38 122 6e-23 seq151 111 1e-19 seq82 102 6e-17 seq66 87.8 1e-12 >seq120 Length=320511 Score = 156 bits (172), Expect = 3e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||||||| || ||||||||||||| ||| ||||| | |||||| || | Sbjct 60817 CCACCTCTCAATCTTAAGACCAAATGAAGGGTAGCATCCTTTTGAACGTTGTAGTCAGAG 60876 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | || || ||||| ||||| || || |||||||||||||| || |||| Sbjct 60877 AGTGTTCTTCCATCCTCCAATTGCTTGCCTGCATAGATCAAACGCTGTTGATCAGCTGGA 60936 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || |||||||| || ||| | || || | || || || || Sbjct 60937 ATTCCTTCCTTATCTGTGATTTTGCTCTTCACATTCTCAATCGAGTCATTAGACTCAACC 60996 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || || || ||| |||| || || ||||| ||||| | |||||| ||| Sbjct 60997 TCCAATGTGATAGTTCTACCAGTGAGTGTTTTGACAAATAGTTGCATGTTT 61047 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | ||| || || | |||| ||| ||||||||||| | ||||||||| | Sbjct 60589 CCTCCACGAAGTCTCAACACAAGGTGAATGGTCGAATCTTTTTGCAAGTTGTAATCAGAG 60648 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | |||| | || || ||||||||||||||||| || ||||| ||||| ||| |||| Sbjct 60649 ATTGTTCTTCCATCCTCCAATTGTTTGCCAGCGTAAATTAAACGTTGTTGATCGGCTGGA 60708 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| || || ||| ||||||||| || ||| | || || | ||| | ||||| Sbjct 60709 ATTCCCTCTTTATCAGCAATTTTGCTCTTCACATTCTCAATCGAGTCGTTGGACTCTACT 60768 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| || || | ||||| ||||| | |||||| Sbjct 60769 TCCAATGTGATAGTTTTTCCAGTTAAGGTTTTCACAAACAATTGCAT 60815 >seq42 Length=292872 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | |||||| ||||| | ||||| ||||| |||||||| |||||||||||| | Sbjct 166394 CCTCCCCTCAATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAG 166335 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| ||||| || |||||| | ||||| | |||||||| ||| Sbjct 166334 AGGGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGA 166275 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || || || ||| | || || ||||| | ||| || Sbjct 166274 ATGCCTTCCTTATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACT 166215 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| || || |||| |||||| ||||| |||||||| Sbjct 166214 TCCAATGTAATGGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 166168 Score = 138 bits (152), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || || || || || || ||||| |||||||| ||| | Sbjct 165710 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCG--G 165653 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| |||||||| ||||| | |||||||| ||||| || || Sbjct 165652 ACAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTG 165593 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| || |||||||| || | || || || ||| | ||| | Sbjct 165592 GAATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCGA 165533 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | || || || ||||| || || || || || || |||||||| || Sbjct 165532 CTTCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATCTT 165481 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| ||||| || || | || || |||||||| ||||||||||| | Sbjct 165938 CCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCA--G 165881 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||||||||| || || || | || | | |||||||| || Sbjct 165880 ACAAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTG 165821 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| || || ||| || |||| || ||||| | || | Sbjct 165820 GAATTCCTTCCTTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAA 165761 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | |||||||| || || |||| ||||| || || ||||||||| Sbjct 165760 CCTCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCATA 165711 >seq29 Length=427163 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | ||| | ||||| || || || ||||| |||||||||||| Sbjct 49275 CCACCTCTTAATCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGAA 49216 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| ||||| || |||||| | |||||||| ||||| || |||| Sbjct 49215 AGGGTTCTGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 49156 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || ||| || || || | || || || ||| || ||| || Sbjct 49155 ATCCCCTCCTTATCTTGAATCTTTGACTTGACGTTCTCGATTGTGTCGTTAGATTCAACT 49096 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||||| |||||| || ||||||||||| Sbjct 49095 TCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 49049 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | || | || || || || || ||||| |||||||| ||| | Sbjct 48781 CCACCTCTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCG--G 48724 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| | ||||||||||| || || || | || | | ||||| || || Sbjct 48723 ACAAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTG 48664 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| || |||||||| || | || || || ||| | ||| | Sbjct 48663 GAATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCGATTGTGTCGTTGGATTCGA 48604 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | || || || || || || | ||| || || || |||||||| || Sbjct 48603 CTTCAAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTT 48552 >seq26 Length=133099 Score = 134 bits (148), Expect = 1e-26 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | |||||| || || ||||| | ||||||||| || || | | ||||||| | Sbjct 73288 CCTCCCCTCAATCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCA--G 73231 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| | || ||||||||||| || ||| | ||||| || ||||| ||| || Sbjct 73230 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTG 73171 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| |||||||| || |||||||| || || | || || | || | |||| Sbjct 73170 GAATCCCTTCCTTATCGGCTATTTTGCTCTTGACGTTCTCGATCGAGTCATTGGACTCTA 73111 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || ||||||||||| ||||| |||| ||||| ||||| |||||||| || Sbjct 73110 CTTCCAAGGTAATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCATGTT 73059 >seq38 Length=237352 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || ||||| || || || ||||| |||| ||| ||||||| |||||||| Sbjct 109293 CCACCACGTAATCTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCGAT 109352 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | || ||||||||||| ||||| || |||||||| ||||| || |||| Sbjct 109353 AAAGTTCTTCCATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGGA 109412 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||||| ||| ||| | || || | || | || || Sbjct 109413 ATGCCTTCCTTATCTGTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGACTCAACA 109472 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || ||| ||||||| || ||||| || || | |||||| || Sbjct 109473 TCCAATGTGATTGTTCTACCTGTAAGTGTTTTAACGAATAATTGCATTTT 109522 >seq151 Length=76492 Score = 111 bits (122), Expect = 1e-19 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||||| ||| ||||| | ||| | || ||||||||||| | | | || || Sbjct 51263 CCTCCTCGCAGTCTCAAAACAAGATGGATAGTTGAATCTTTTTGCAAGCTATAGTC---- 51208 Query 15010 AGAA----TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 |||| |||| | || || |||||||| |||||||| || ||||| ||||| || Sbjct 51207 AGAAACTGTTCTTCCATCCTCCAATTGTTTTCCAGCGTAAATTAAACGTTGTTGATCCGC 51148 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||||| |||||||| |||||||| || || || || | || || | || | || Sbjct 51147 TGGAATACCTTCCTTATCACAAATCTTTCTCTTCACGTTCTCAATCGAGTCATTGGACTC 51088 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | | || | || ||||| || ||||||| ||| || || || | ||||||| Sbjct 51087 TGCTTCAATCGTGATGGTCTTTCCTGTCAAAGTCTTGACGAATAATTGCATA 51036 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| || | || ||||| || | ||| ||||||| || ||||| Sbjct 51035 CCACCTCTTAATCTCAACATCAAGTGAAGAGTTGCATCCTTTTGTACATTATAATCCGAT 50976 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | || || ||||| || ||||| || |||||||||||||| || |||| Sbjct 50975 AAAGTTCTTCCATCCTCCAATTGCTTACCAGCATAAATCAAACGCTGTTGATCCGCTGGA 50916 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || | ||| ||| ||| | || || | || | || || Sbjct 50915 ATACCTTCCTTATCTGTGACTTTCTGTTTAACATTCTCAATTGAGTCATTGGACTCAACA 50856 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || ||| ||||||| || || || ||||| | |||||| || Sbjct 50855 TCCAATGTGATCGTTCTACCTGTAAGTGTCTTGACAAATAATTGCATGTT 50806 >seq82 Length=211372 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| || || || || | ||||| || ||||| |||||||| || | Sbjct 147706 CCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCA--G 147763 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| | ||||| ||||| || || || | ||||| | ||||| || | Sbjct 147764 ACAAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAG 147823 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| ||| || || ||| | || || || ||| | ||| | Sbjct 147824 GAATACCTTCCTTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGA 147883 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| ||||| |||| || || || ||||||||||| Sbjct 147884 CCTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCAT 147932 >seq66 Length=52705 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 11/230 (5%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||||||| ||||| | |||| ||| || | |||||| |||||||| Sbjct 316 CCTCCACGCAATCTCAAAACAAGGTGAATGGTCGAGT--TTTTGTTAATTGTAATCAGAA 259 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | || ||||||||||| ||||| || || ||||| ||||| || |||| Sbjct 258 ACACTTCTTCCATCCTCTAATTGTTTTCCAGCATAGATTAAACGTTGTTGATCTGCTGGA 199 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || ||||| ||| |||| ||||| | ||||| | | || | Sbjct 198 ATACCCTCTTTGTCTGCAATCTTGCGCTTTACGTTGTCTAT-------CCA--GTCGTCA 148 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || | |||||| | || || ||||| || ||||| | |||||| || Sbjct 147 TCCAATGCGATGGTTCTTCCAGTGAGAGTCTTGACAAATAGTTGCATTTT 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357389499819590