Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq38 98.7 9e-16 seq26 98.7 9e-16 seq42 96.9 3e-15 >seq38 Length=237352 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||||| ||||||||| || | |||| || ||||| | ||||||||| Sbjct 109293 CCACCACGTAATCTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCGAT 109352 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| |||| ||||||||||| || ||||| || || ||||| | || Sbjct 109353 AAAGTTCTTCCATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGGA 109412 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||||| ||||| || ||||||||||| || Sbjct 109413 ATGCCTTCCTTATCTGTGATTTTCTGTTT 109441 >seq26 Length=133099 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| |||||||||||| | ||||| || || |||| ||||||| || || | Sbjct 73279 AATCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGACAAGGTTCTT 73220 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| |||| |||||||| ||| | |||||||| || ||||||| || || || ||| Sbjct 73219 CCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGGAATCCCTTCC 73160 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 || || | ||||| ||||| | |||| | ||| | ||| ||||| | ||| Sbjct 73159 TTATCGGCTATTTTGCTCTTGACGTTCTCGATCGAGTCATTGGACTCTACTTCCAAGGTA 73100 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || || || |||| ||||| ||||| || |||||| Sbjct 73099 ATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCATG 73061 >seq42 Length=292872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| ||| || | || | ||||||||||||||||| ||||||||| | || | Sbjct 166385 AATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAGAGGGTTCTT 166326 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || | || || |||||| | ||||||| || || || ||||| ||||| ||| Sbjct 166325 CCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCC 166266 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 || || ||| || ||||| | |||| ||| || | |||||||| | || Sbjct 166265 TTATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACTTCCAATGTA 166206 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || ||||| |||| |||||| ||||| || ||||| Sbjct 166205 ATGGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 166168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497388281760