Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq29 131 2e-25 seq42 129 5e-25 seq82 104 2e-17 seq120 93.3 4e-14 seq26 89.7 5e-13 seq151 86.0 6e-12 seq38 82.4 7e-11 >seq29 Length=427163 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||| || || || || ||||||||||||||||| || |||||| | |||| | | Sbjct 49263 CTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCA 49204 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || ||| | ||||| ||||| || || || ||||| || || ||| Sbjct 49203 TCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATCCCCTCCTTA 49144 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| ||| |||| || | || | |||||| ||| || ||||| | ||| | Sbjct 49143 TCTTGAATCTTTGACTTGA-CGTTCTCGATTGTGTCGTTAGATTCAACTTCCAAAGTGAT 49085 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | |||||| || ||||||||||| Sbjct 49084 GGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 49049 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| || | || || || || || ||||||||||| || || || ||| Sbjct 48784 ATACCACCTCTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCG 48725 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || ||||| ||||| || | || | || ||| || || || Sbjct 48724 GACAAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGT 48665 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||| || || ||| | || | || | |||||| || || Sbjct 48664 GGAATTCCTTCCTTGTCTTGGATCTTGCTTTTCA-CGTTCTCGATTGTGTCGTTGGATTC 48606 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| | || ||||| |||| ||| || || || |||||||| Sbjct 48605 GACTTCAAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCAT 48555 >seq42 Length=292872 Score = 129 bits (142), Expect = 5e-25 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 45103 TTTATTTTATT----CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGG 45158 ||||||| ||| ||||| | | ||||| || || || || || || || ||||| Sbjct 166409 TTTATTTAATTGGAACCTCCCCTCAATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGA 166350 Query 45159 ATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGT 45218 || || |||||| || |||| | ||| |||||||| || || ||| | ||||||| | Sbjct 166349 ATGTTGTAATCGGAGAGGGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTT 166290 Query 45219 TGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTG 45278 || ||||| || ||||||||||| |||||||| || ||| |||| || | ||| Sbjct 166289 TGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGACTTGACATTCTCGATGGTA 166230 Query 45279 TCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338 || || |||||||| | |||| || ||||| || | |||||| ||||| |||||| Sbjct 166229 TCATTGGATTCGACTTCCAATGTAATGGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGC 166170 Query 45339 AT 45340 || Sbjct 166169 AT 166168 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | || || || |||||||||||||| || || ||| | |||| | Sbjct 165698 CTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCG 165639 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||||||||| || || | ||||| ||||| || || || ||||| ||||| || Sbjct 165638 TCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTG 165579 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || ||| | || | || | |||||| || |||||||||||||| | Sbjct 165578 TCTTGGATCTTGCTTTTCA-CGTTCTCAATCGTGTCGTTGGATTCGACTTCGAGAGTGAT 165520 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || || || || || ||||||||| Sbjct 165519 AGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATC 165483 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | || | || || |||| || ||||||||||| || || || ||| Sbjct 166169 ATTCCTCCTCTCAATCTAAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCG 166110 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || ||||||||||| || || | ||||| ||||| || || || Sbjct 166109 GAGAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 166050 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||||||||| || || | ||| | ||||||| || || Sbjct 166049 GGAATACCTTCCTTATCTTGAATCTTGCTCTTCACGTTTTCGATGGTGTCGTTGGATTCA 165990 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| || || || || || || || || || |||||||| Sbjct 165989 ACTTCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165940 >seq82 Length=211372 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | |||| || ||||||||||| || || || || | |||| | | Sbjct 147718 CTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCCA 147777 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| ||||| || | ||||||| ||| || || || ||||| ||||| || Sbjct 147778 TCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTG 147837 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| ||| |||| || | ||||||| || ||||| || | ||| | Sbjct 147838 TCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGACCTCCAAAGTGATG 147897 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || || || ||||||||||| Sbjct 147898 GTCTTACCGGTCAAGGTCTTAACGAAAATTTGCAT 147932 >seq120 Length=320511 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| || || |||||||| || || | || || || ||||| | || ||||| Sbjct 60587 TTCCTCCACGAAGTCTCAACACAAGGTGAATGGTCGAATCTTTTTGCAAGTTGTAATCAG 60646 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || ||| | ||| ||||||||||| || ||||| || || ||||| || || | | Sbjct 60647 AGATTGTTCTTCCATCCTCCAATTGTTTGCCAGCGTAAATTAAACGTTGTTGATCGGCTG 60706 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| || |||||||| |||||| || | || | | |||| ||||| | Sbjct 60707 GAATTCCCTCTTTATCAGCAATTTTGCTCTTCACATTCTCAATCGAGTCGTTGGACTCTA 60766 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| | || | ||||| || |||| ||||| ||||| | |||||| Sbjct 60767 CTTCCAATGTGATAGTTTTTCCAGTTAAGGTTTTCACAAACAATTGCAT 60815 >seq26 Length=133099 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||||||| | ||||| || || ||||| || | | ||||| | |||| | | Sbjct 73276 CTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGACAAGGTTCTTCCA 73217 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||||||| | ||||||||||| || || | ||||| ||||| ||| Sbjct 73216 TCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGGAATCCCTTCCTTA 73157 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || ||||| |||| || | || | | ||| ||||| ||||| | |||| Sbjct 73156 TCGGCTATTTTGCTCTTGA-CGTTCTCGATCGAGTCATTGGACTCTACTTCCAAGGTAAT 73098 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||| ||||| |||||||| Sbjct 73097 GGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCAT 73062 >seq151 Length=76492 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || || ||||| || ||||| | ||||| || ||||| | |||| || Sbjct 51264 TCCTCCTCGCAGTCTCAAAACAAGATGGATAGTTGAATCTTTTTGCAAGCTATAGTCAGA 51205 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || ||| | ||| |||||||||||||| ||||| || || ||||| || |||| || Sbjct 51204 AACTGTTCTTCCATCCTCCAATTGTTTTCCAGCGTAAATTAAACGTTGTTGATCCGCTGG 51145 Query 45233 AATGCCTTCTTTATC 45247 ||| ||||| ||||| Sbjct 51144 AATACCTTCCTTATC 51130 >seq38 Length=237352 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||||||| | || || || | |||||||| | ||| ||||| | ||| | | Sbjct 109305 CTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCGATAAAGTTCTTCCA 109364 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| || || ||||| ||||| || || | ||||||||||| ||| Sbjct 109365 TCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGGAATGCCTTCCTTA 109424 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||| ||||| ||||| | || | | ||| ||||| || || | || | Sbjct 109425 TCTGTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGACTCAACATCCAATGTGATT 109484 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| | || || || ||||| || || | |||||| Sbjct 109485 GTTCTACCTGTAAGTGTTTTAACGAATAATTGCAT 109519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999956877040