Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq36 187 3e-42 >seq36 Length=122865 Score = 187 bits (206), Expect = 3e-42 Identities = 620/959 (65%), Gaps = 9/959 (1%) Strand=Plus/Plus Query 116239 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 116298 ||||| |||| || | || || ||||| | ||||| || ||||||||||||||| | Sbjct 115245 ATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGACGATGTCTCATATTACTC 115304 Query 116299 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 116358 |||| ||| ||| || |||||| ||||| | || || | | | || | ||| |||||| Sbjct 115305 TTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATCTTGTTCAAATTCTTGGTG 115364 Query 116359 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 116418 ||| || |||||| | | ||| | ||| | | || ||| ||||||||| Sbjct 115365 GCAATTTTGACAATTTCAAACAATTGTTCATGATCGTAGGTACGTGTCGTCTCATTGACA 115424 Query 116419 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 116478 ||||| ||||| || || |||| |||||||||| ||||| | | ||||| Sbjct 115425 TACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGCTACTTCATCTGGAGCTGTGTAT 115484 Query 116479 TCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 116538 || |||||||| |||||||| || || || || || || | || | ||||||||| Sbjct 115485 TCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGTTCCAAGATTTTGTTGATTTGAT 115544 Query 116539 TTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTG 116598 ||| | ||||| |||||||| || ||||| || || || ||||| |||| | || Sbjct 115545 TTTCTATTACATGCATCCTTATAAAGCATGTAAGGAACACCAGTCTCAATTTGTGCCTCA 115604 Query 116599 AGAATAGCCTTCCATACATCGGCGGCTGGCAC--AGTGGCGTTGGCTCGCCCCTCCTCCT 116656 | ||| || ||| | || || | || ||||| || || ||||||| || Sbjct 115605 ATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACGGCGT--GCACGACCCTCCTTCT 115662 Query 116657 CGTACTTTGTGTAGAGGGCCTCAAACTCTTCA-CCCACAGCCTCTGAGAGCCCTGGTGCC 116715 | || || | | | |||||||||| |||||| | || | || || || || Sbjct 115663 CATAACGCAAATACAATTCATTAAACTCTTCACCCCACA-CATCAGCAAGTCCAGGAGCT 115721 Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 | || ||||| ||||| ||||| ||| | |||||| || | || ||| || | || Sbjct 115722 TCATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCACTCTCTCCATAAACAAATCA 115781 Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835 | ||| | || | || | ||| ||| ||| ||| || | || ||| Sbjct 115782 TTCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTTCCTCCTTTCCAGTATTCTTT 115841 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 116895 | ||| || ||||| || | ||||| | ||||| || |||| || || || | | Sbjct 115842 CTCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTCCAAATAAACGGCAAAGGCT 115901 Query 116896 CCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGC 116952 || || || || |||| | || | || || | || || |||| ||||| |||||| Sbjct 115902 CCTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAGTGTCGTTGAATACACGAAGC 115961 Query 116953 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTG 117012 || ||||||| |||| || || || || || ||||| || ||| | Sbjct 115962 ATGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAATGTAGGATCCAGAGGCACGA 116021 Query 117013 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTG 117072 | | || | | || || ||||| || || | ||| || || || ||| | || Sbjct 116022 ATGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGATATCAAGGCACACGTCTTG 116081 Query 117073 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 117132 || | |||| || || || || || | || | || | | |||||| | Sbjct 116082 AGTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATGGCCACTAAGAAGCAAGAACTC 116141 Query 117133 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC 117191 ||||| || | || |||||||| |||||||| || || | ||||||||||||||||| Sbjct 116142 ATTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAGAGGCGTGGATGAACATACC 116200 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 115564 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 115623 || ||||| || ||||| | |||| |||| ||||| | ||||| || |||| ||| Sbjct 114543 TAATACATTCCAGTCTTCAATCCCTTACTCCAAGCATAAAAGTGCATGGAAGACATTTTG 114602 Query 115624 GAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCC 115683 |||| | |||| | | || |||| || | ||| |||||||| ||||| | | Sbjct 114603 GAGATGGATGGAGTGGCAATAAAGACATTGAGTGATTGAGATTGATCAATGAATGGAGCT 114662 Query 115684 CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGG 115743 | || || | ||| | || | ||| ||||||||||| ||||| |||| | Sbjct 114663 CTCTCAATGGCAAGATCCAACAAACTCTTTTGTTTGATTTCCCAAACAGTCTTGTACAAT 114722 Query 115744 TTCTTAATATCATCTGGGATATCCA-CGATATTTTGGATAGAGCC 115787 | ||||||||||||||| || |||| | || ||||| ||||| || Sbjct 114723 TCCTTAATATCATCTGGAAT-TCCAGCAATGTTTTGAATAGAACC 114766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502798085840