Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq29 140 8e-28 seq82 132 1e-25 seq42 118 2e-21 seq76 93.3 1e-13 seq120 87.8 4e-12 seq38 86.0 1e-11 >seq29 Length=427163 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||||||||||||||| || |||||||| | ||||||||| | ||| || ||| Sbjct 48772 AGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTT 48713 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| | ||||||||||| |||||||| | || || || || ||||||||| Sbjct 48712 CCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTGGAATTCCTTCC 48653 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || ||||| |||||| |||| ||||| | | ||| || || | ||| Sbjct 48652 TTGTCTTGGATCTTGCTTTTCACGTTCTCGATTGTGTCGTTGGATTCGACTTCAAGAGTG 48593 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || | ||| || || || ||||| Sbjct 48592 ATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTG 48558 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| ||||||||||| || ||||||||||| || ||| |||| |||||| Sbjct 48676 AAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGACTACAACA 48735 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 201026 | || || || || ||||| |||||||| | ||||| Sbjct 48736 TTCAAAAGGAATCCACTCTCCACCTTGTCCTCAGACT 48772 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || ||||| || ||||| ||||||||||| || || | ||||||||||| |||| || Sbjct 49178 ATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACAACATCCAAAAG 49237 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGA 201024 || || ||||||||||||||| ||||| Sbjct 49238 GAATCAACTCTTCACCTTGTTCTGAGA 49264 >seq82 Length=211372 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| | || || |||||||| | ||||||||||| ||| || || || Sbjct 147717 TCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCC 147776 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| ||||||||||| ||||| | | || || || ||| ||| ||||| Sbjct 147777 ATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTT 147836 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||||||| ||| || |||| |||||| | | ||| || ||||| ||||| Sbjct 147837 GTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGACCTCCAAAGTGAT 147896 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | || || || |||||||| Sbjct 147897 GGTCTTACCGGTCAAGGTCTTAACGAAAATTTG 147929 >seq42 Length=292872 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| |||||||| ||||| ||||| ||||| | |||||| || | | || ||||| Sbjct 166383 TCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAGAGGGTTCTTCC 166324 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| ||||| || ||||| || | | || ||||| ||| ||| ||||| Sbjct 166323 ATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTT 166264 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || |||||| ||| || |||| ||| || | | ||| || ||||| || || Sbjct 166263 ATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACTTCCAATGTAAT 166204 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | |||||| ||||| ||||| Sbjct 166203 GGTCTTGCCAGTCAAAGTTTTAACAAAGATTTG 166171 Score = 104 bits (114), Expect = 6e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| | | || ||||| || ||||| |||||||||||||| || | ||||||||||| Sbjct 166289 AAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAACA 166348 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 201024 | || |||||||||||||||||||||||||||||| Sbjct 166349 TTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGA 166383 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||| || | ||| | || || || ||||| | |||||| |||| ||| || ||| Sbjct 165929 AGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTT 165870 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||| | ||||||||||| |||||||| | || ||||| || ||||||||| Sbjct 165869 CCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCC 165810 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || |||||| || ||| ||| | ||| || | | || || || | || Sbjct 165809 TTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAACCTCAAGAGTA 165750 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || | ||||| || || ||||| Sbjct 165749 ATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTG 165715 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| ||||||||||| || ||||| ||||| || ||| | ||||||||| Sbjct 165833 AAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTACAACA 165892 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 201026 | || ||||| || || | ||| | ||||||||||| Sbjct 165893 TTCAAAAAGAATCAACATTGCACTTGGTTTTGAGACT 165929 >seq76 Length=223365 Score = 93.3 bits (102), Expect = 1e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||||||||| || |||||||| | ||||||||||| ||| || || || Sbjct 84299 TCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTTCTGCC 84358 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| ||||| || || || || | | || || || ||| ||| ||||| Sbjct 84359 ATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTT 84418 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || || |||||| |||||| |||| |||||| Sbjct 84419 GTCTTGGATCTTTGACTTCACATTCTCGATGGTGTC 84454 >seq120 Length=320511 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| |||||||| | ||||| || ||||| | |||||| |||| | || Sbjct 60595 CGAAGTCTCAACACAAGGTGAATGGTCGAATCTTTTTGCAAGTTGTAATCAGAGATTGTT 60654 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| |||| || || || ||| | || | ||| || || || | |||||| Sbjct 60655 CTTCCATCCTCCAATTGTTTGCCAGCGTAAATTAAACGTTGTTGATCGGCTGGAATTCCC 60714 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || ||| || |||||| || | | ||| | | ||||| ||||| Sbjct 60715 TCTTTATCAGCAATTTTGCTCTTCACATTCTCAATCGAGTCGTTGGACTCTACTTCCAAT 60774 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||||||||||| | ||| Sbjct 60775 GTGATAGTTTTTCCAGTTAAGGTTTTCACAAACAATTG 60812 >seq38 Length=237352 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| | ||||||| || || ||||| ||||| |||||||| |||||| ||| |||||| Sbjct 109170 AAAGAATTATCTTTGCTGGTAAGCAATTGGAGGATGGAAGAACTTTGAGCGACTACAACA 109111 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 201026 | || || || || ||||| ||| | ||||||||||| Sbjct 109110 TTCAAAAGGATTCCACTCTACACTTGGTTTTGAGACT 109074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178912929768458