Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq42 125 7e-24 seq120 86.0 6e-12 seq29 86.0 6e-12 >seq42 Length=292872 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| || || ||||| || || || ||||| |||| ||||| || Sbjct 165481 AAGATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAATCC 165540 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | || |||| |||| || | ||| ||||| || |||||||| | || Sbjct 165541 AACGACACGATTGAGAACGTGAAAAGCAAGA-TCCAAGACAAGGAAGGAATTCCACCTGA 165599 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| || | |||| || || ||||| |||| |||| | ||| | |||||| Sbjct 165600 TCAACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTA 165659 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||||||| | || || || ||||| || | |||||||| || Sbjct 165660 CAACATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 165710 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || || || || | || || || ||| | Sbjct 165940 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAAC 165999 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||||| | |||| || || | || || || || ||||| | || | Sbjct 166000 GACACCATCGAAAACG--TGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATC 166057 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | |||| || || ||||| |||| |||| | || ||| |||||||| Sbjct 166058 AACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACA 166117 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||||||| | || |||| | || || | |||||||| || Sbjct 166118 ACATTCAAAAGGAATCCACATTGCACCTTGTTCTTAGATTGAGAGGAGG 166166 >seq120 Length=320511 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||| | || || ||||| | || || ||||| ||||| | || || ||| ||| Sbjct 60816 AATGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAA 60757 Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || || | | || |||| | || || |||||||||||||| ||||| | Sbjct 60756 CGACTCGATTGAGAATGTGAAGAGCAAAATTGCT-GATAAAGAGGGAATTCCAGCCGATC 60698 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | |||||||| |||||||| |||| || | | || || || |||| Sbjct 60697 AACAACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACA 60638 Query 38422 ACATCCAAAAGGAAGCGAC 38440 || | ||||| || |||| Sbjct 60637 ACTTGCAAAAAGATTCGAC 60619 >seq29 Length=427163 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| | || || || |||||||| | || || || | | Sbjct 49048 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTGAATCTAA 49107 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | |||| | || ||| || | || || ||||| ||||| | || | Sbjct 49108 CGACACAATCGAGAACG-TCAAGTCAAAGATTCAAGATAAGGAGGGGATTCCACCAGATC 49166 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | |||| ||| || || || |||| || | | ||||| ||| |||| Sbjct 49167 AACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACA 49226 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||||| | || || || | || ||| | || ||||| || Sbjct 49227 ACATCCAAAAGGAATCAACTCTTCACCTTGTTCTGAGATTAAGAGGTGG 49275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169211260160