Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq45 450 2e-121 seq168 363 2e-95 seq145 235 7e-57 seq36 174 2e-38 seq13 145 1e-29 seq55 122 1e-22 seq260 84.2 3e-11 >seq45 Length=337926 Score = 450 bits (498), Expect = 2e-121 Identities = 1035/1544 (67%), Gaps = 31/1544 (2%) Strand=Plus/Plus Query 6611 TCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTA 6670 ||||| ||||| || ||||| ||||| || || || || || || ||||| | ||| Sbjct 191127 TCAATTTCTTCCTTGCTCAATCTACCCTTGTCGTTGGTGATGGTGATATTTTCAGTCTTA 191186 Query 6671 CCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTT 6730 || |||| | ||| | |||| || |||| ||||| || || |||| || || | Sbjct 191187 CCAGAGGATTCATCCTTAGCAGAAACCTTCATGATACCGTTGGCGTCAATTTCAAAGGTG 191246 Query 6731 ACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCA 6790 || | ||| | ||| || || ||||| | |||||||||| || | ||| |||| Sbjct 191247 ACTTCAATCTTTGGAACTCCTCTTGGTGCAGGTGGAATACCCTCCAAGTTGAATTTACCC 191306 Query 6791 AGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCA 6850 | || || ||| | | | | | | |||||||| || |||| ||| || || ||| Sbjct 191307 AACAAGTGATTGTCCTTGGTCATGGTTCTCTCACCTTCGTATACTTGAATGGTGACAGCA 191366 Query 6851 GGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTT 6910 | ||| ||||| |||| |||| ||||| ||||| | ||||| || || ||| Sbjct 191367 GTTTGGTTATCAGCATAGGTTGTGAAGGTTTGTGACTTCTTGCAAGGAATGGTAGTGTTT 191426 Query 6911 CTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTC 6970 || ||| | | |||||| | ||| || |||||| | || || || ||||| || Sbjct 191427 CTTTCAATCAACTTGGTCATGACACCTCCAGCAGTTTCAATACCGAGCGAGAGAGGAGTA 191486 Query 6971 ACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCT 7030 ||||| | | ||| | || | || |||| ||| || || | | ||| Sbjct 191487 ACGTCAATCA---ACAAGACTCTA--------GTCTCCTT-ACCAGTCAAAACACCAGCT 191534 Query 7031 TGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTA 7090 || || | || || || || || || ||||| ||||| || | || || ||| || Sbjct 191535 TGAACAGCAGCACCATAAGCAACAGCTTCATCAGGGTTGATAGACTTGCACAATTCCTTT 191594 Query 7091 CCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACC 7150 ||||| || | ||| | ||||| ||||| || || || || || || ||||||||| Sbjct 191595 CCGTTGAAGAAGTCCTTGAGCATTTCTTGAACCTTTGGAATACGAGTAGAACCACCGACC 191654 Query 7151 AAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACA 7210 || || | |||| | || || ||||| | || ||| | | || | ||| Sbjct 191655 AAGACAACATCATCAATTTGTGACTTATCCAATCCAGAATCTTGCAAAACCTTCTTGACT 191714 Query 7211 GGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATG 7270 ||||| | ||| || | ||||| ||||| || || ||| || ||||| || ||| Sbjct 191715 GGTTCGAAACAATTTCTGAACATATCCATGTTCAATTGCTCGAATTTGGCACGAGTCATG 191774 Query 7271 GATGTATAGAAATCAACGCCGTCGTATAAC-GAATCAATTTCAATGGTTGTTTGTGCCGT 7329 | ||| |||||| || || |||| ||||| | |||||||| | || | Sbjct 191775 GTAATATCCAAATCAGTACCATCC-ATAATAGAATCGACAGAAATGGTTGCGTTGGCAGC 191833 Query 7330 CGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGG 7389 ||||| || ||| |||||| | ||||| || |||| || | | | || | || Sbjct 191834 AGAAGACAAGTTTCTCTTTGCTCTTTCACAAGCAGTTCTCAATCTTCTCAAAGCTCTTGG 191893 Query 7390 GTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGAAGGA 7448 || | | | ||| ||||| || || | || || |||| | | || ||| || | Sbjct 191894 ATTTTCAGTCAAATCCTTCTTGTGCTTTCTCTTGAATTCTTGACAACAGAAGTC-AACCA 191952 Query 7449 GTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAA 7508 || || || ||||||||||||||||| ||||| || || || || |||||||| | Sbjct 191953 TTCGGTTGTCAAAGTCTTCACCACCCAAGTGAGTATCACCAGCAGTAGCCTTGACTTCGA 192012 Query 7509 AGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568 | | ||| |||||||||| || | ||||||||||| ||||||||||||| || |||| Sbjct 192013 AAACACCATCTTCAATGTTCAAAATGGAAACATCAAAAGTACCACCACCCAAATCGAAAA 192072 Query 7569 TGAGTACGTT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 |||| || || ||| || | | |||||| | ||| || || ||||| || || Sbjct 192073 TGAGAACATTACGT-TCACCCTTCTTGTTC------AAACCATAGGCAATAGCAGCAGCA 192125 Query 7628 GTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGT 7686 |||||||| ||||||||||| || ||| | || ||||||||||| | ||||| || || Sbjct 192126 GTTGGTTCGTTAATAATACGCAAAACA-TCCAAACCAGCAATAGTACCGGCATCCTTTGT 192184 Query 7687 CGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTT 7746 ||||||| ||| || ||||||||||| || || || || ||||| || | | |||||| Sbjct 192185 GGCTTGTCTTTGAGAGTCGTTAAAGTAAGCAGGAACAGTAACGACAGCCTTCTTGACTTG 192244 Query 7747 CTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 ||| || | ||| ||| || |||||| |||| || || || ||||| |||||||| | Sbjct 192245 CTTTCCCAAATATTGTTCGGCAATATCTCTCATCTTTGTGAGGACCATGGATGAAATTTG 192304 Query 7807 TTCAGCCG-CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCG 7865 ||| | | ||| ||| | |||||||| || | || |||| || |||||||| Sbjct 192305 TTCTGGTGTAAAAGTGTGT-GTTTCACCCTTGTATTCGACTTGGATGTATGGTTTATCAT 192363 Query 7866 CAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCG 7925 | | | || ||||| | | ||| | |||||||| |||| || | || Sbjct 192364 CTCCCTTAGTAATCACCTTGAAAGGCCAGTGCTTCATATCAGCTTGAACGCTAGGATCAC 192423 Query 7926 AAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTG 7985 || ||||| || || | |||||| |||||||| ||||| || | || |||||||| Sbjct 192424 TGAATTTTCTACCAATCAAACGCTTGGCATCAAAGACTGTATTGTGTGGATTCATGGCAA 192483 Query 7986 TTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACG 8045 ||||||||| || || || || || | |||||| | ||| || || || || || | Sbjct 192484 CTTGGTTCTTGGCAGCATCACCAATCAAACGTTC---CTCTTCAGTGAAAGCAACATAAG 192540 Query 8046 ATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGA 8105 |||| || |||| || ||||| ||||| | ||||||||| || |||| ||| Sbjct 192541 ATGGTGTTGTTCTGTTACCTTGATCGTTTGGAATAATTTCAACATTGTCGCCCATATAGA 192600 Query 8106 CGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 | || ||||| || || || || || ||||| ||||| ||| Sbjct 192601 CACCAACGCAACTGTAGGTGGTACCCAAGTCAATTCCGATAGCT 192644 >seq168 Length=66175 Score = 363 bits (402), Expect = 2e-95 Identities = 1032/1568 (66%), Gaps = 36/1568 (2%) Strand=Plus/Plus Query 6588 TTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCG 6647 |||| | ||||| | ||| | |||||| ||||| || |||| ||||| ||||| | Sbjct 20656 TTTCGCCTTCTTG-AGCATTTCTTCAATTTCTTCCTTACTCAATCGACCCTTGTCATTGG 20714 Query 6648 TAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATAC 6707 |||| ||||| || || | || || |||| | ||||| ||| || |||| |||| Sbjct 20715 TAATGGTAATATTCTCAGTCTTTCCAGAGGATTCATCTTTGGCAGAGACCTTCATGATAC 20774 Query 6708 CATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAA 6767 |||||||||||| || || | || | ||||| ||| ||| || || || | ||||| Sbjct 20775 CATTTGCATCAATTTCAAAGGTGACTTCAATTTTTGGAACACCTCTTGGAGCAGGTGGAA 20834 Query 6768 TACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTT 6827 | || |||| |||| | || | || || ||| | | | | | ||||||| Sbjct 20835 TTCCTTCCAAATTAAATCTTCCCAACAAGTGATTGTCCTTGGTCAAGGTTCTCTCACCTT 20894 Query 6828 CATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTT 6887 ||||||||| ||| || || || | ||||||||| || | ||| ||| | || Sbjct 20895 CATAGACTTGAATAGTGACAGCTGTTTGATTATCAGCATAGGTCGTGAAAGTTTCTGATT 20954 Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947 ||||| | ||||| || || |||||| ||| | | |||||| | ||||| ||||| Sbjct 20955 TCTTACAAGGAATAGTAGTGTTTCTCTCAATCAACTTGGTCATGACTCCACCAGCAGTTT 21014 Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007 | | || || || ||||| || || || | | || | ||||| || ||| Sbjct 21015 CAATACCGAGTGAGAGAGGAGTGACATCAATCAACAAGAC-TCTTG-------TC--TCC 21064 Query 7008 CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGT 7067 ||| | || || | | ||||| || | || || || || || || ||||| || | Sbjct 21065 TTTC--CAGTCAAAACACCTGCTTGAACAGCAGCTCCATAAGCCACAGCTTCATCTGGAT 21122 Query 7068 TAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAA-CATTTGTTGAATTTTC 7126 | || | ||| || ||| || || ||||| ||| | ||| ||| | ||||| || Sbjct 21123 TGATGCTCTTACACAATTCCTTTCCATTAAAG-AATTCTTTAAGCATATCTTGAACCTTT 21181 Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186 || ||||| || || || || || | ||| | |||| | || || || || | Sbjct 21182 GGAATTCGAGTGGAACCTCCCACGAGAACCACGTCATCAATTTGTGACTTGTCCAATCCA 21241 Query 7187 GAGTCTCG-AAGTGTTTTTTCGACAGGTTCCATACA---TTTACGGAACAAGTCCATACA 7242 || ||| | || ||| || || ||||| | || |||| || | |||||| Sbjct 21242 GAATCTTGCAAAACCTTTCTC-ACTGGTTCGAAGCAATGTTTA---AAGAGATCCATATT 21297 Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACG- 7301 || || || || || | || || | | | ||||||| ||| || |||| | Sbjct 21298 CAATTGTTCGAATTTGGCTCTTGTCATTGGAATGTCCAAATCAATGCCATCC-ATAATGG 21356 Query 7302 AATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 |||| | || || | | || | ||||| ||| |||||| | |||||| | Sbjct 21357 AATCGACAGAAACCGTCGCATTGGCAGCACTTGATAAATTTCTCTTTGCTCTCTCACAGG 21416 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | |||| || | | | || || || || | |||||| ||||| | || | | Sbjct 21417 CAGTTCTCAATCTTCTCAAAGCTCGTGGATTGTCATGAATATCCTTCTTGTACTTTCTCT 21476 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 |||| || | | || | | | | | ||| ||||||||||||||| |||||||| | Sbjct 21477 TAAATTCCTGACAGCAATATTCGACCATTCTGTTATCGAAATCTTCACCTCCCAAGTGAG 21536 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || ||||||||||| || | ||| |||||||||| | | || |||| Sbjct 21537 TGTCTCCAGCAGTGGCTTTGACTTCGAAAACTCCTTCTTCAATGTTCAGAATGGAGACAT 21596 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTAT 7601 |||| || ||||| |||| || |||||||| || || || | || ||||| | Sbjct 21597 CAAAGGTTCCACCTCCCAAATCGAAAATGAGAACATT----TCTT--TCACCTTTCTTGT 21650 Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT-CAGG 7660 | ||| || || || || || || || |||||||| || || | | ||| || || Sbjct 21651 TTAAACCATAAGCAATGGCAGCTGCTGTGGGTTCATTGATGATTCTCA-ACACTTCCAAA 21709 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 ||||||||||| | |||||||| || ||||||| ||| ||||| || || ||||| || Sbjct 21710 CCAGCAATAGTACCTGCATCTTTTGTGGCTTGTCTTTGTGAATCATTGAAATAGGCAGGA 21769 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780 || || | ||| || | |||| || ||||| | ||| | ||| | || || |||||| Sbjct 21770 ACGGTAATGACTGCTTTTTTGACCTTTTTACCTAAATAGGCTTCTGAAATTTCCTTCATT 21829 Query 7781 TTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAA 7840 ||||| |||||||| || || | ||||| | ||| | ||||| || || | Sbjct 21830 TTGGTGAGAACCATACTCGAGATTTGTTCAGGTGTGAACACATGAGTTTCTCCCTTGTAT 21889 Query 7841 TCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTC 7900 || |||| ||| | |||||||| | | | || || || | | ||||| ||| Sbjct 21890 TCTACTTGAATGAGTGGTTTATCATCTCCCTTTGTAATGACTTTGAATGGCCAATGCTTC 21949 Query 7901 ATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAA 7960 ||||| | || || | | || | |||| ||| || | || || ||||| || Sbjct 21950 ATATCTGCCTGAACACTTGGATCACTGTATTTTCGTCCAATCAATCGTTTGGCATCGAAT 22009 Query 7961 ACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCA 8020 ||||| || | || |||||||| ||| ||||| || | ||| || || | |||||| Sbjct 22010 ACTGTATTGTGAGGATTCATGGCCACTTGATTCTTGGCAGAGTCTCCAATTAAACGTTCC 22069 Query 8021 TTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATA 8080 | | || ||||| || || || ||||| || |||||||| ||||| ||||| | ||| Sbjct 22070 TGA---TCGGTAAAGGCCACATAGGATGGAGTGGTTCGATTACCTTGATCGTTGGGAATG 22126 Query 8081 ATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATA 8140 ||||| || |||| |||| ||||| || || || ||||||||||||||| Sbjct 22127 ATTTCAACATTGTCGCCCATGTAGACACCGACACAGCTGTAAGTGGTTCCTAAATCAATA 22186 Query 8141 CCGATTGC 8148 || || || Sbjct 22187 CCAATGGC 22194 >seq145 Length=379783 Score = 235 bits (260), Expect = 7e-57 Identities = 443/638 (69%), Gaps = 25/638 (4%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| |||||||||||||||||||| ||||| || || || |||||||||| ||| Sbjct 307505 ATCAAAATCTTCACCACCCAAGTGAGTATCTCCGTTAGTGGCCAAAACTTCAAAGAGACC 307564 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | | || | ||| ||||| ||||||||| ||||||||||||| || |||| || || Sbjct 307565 TTCATCCAAGTTCAACAAACTAACATCAAAAGTACCACCACCCAAATCGAAAACAAGAAC 307624 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || |||| | ||||||||||| | ||||| || ||||| || || |||||||| Sbjct 307625 ATTGA---CGTCCTTCTTGTTCTTATCCAATCCGTAAGCAATAGCTGCGGCTGTTGGTTC 307681 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || |||||||| |||| ||| || ||||||||| | |||||| | || ||||||| Sbjct 307682 GTTGATAATACGTTCAACAG-TCAATCCGGCAATAGTTCCGGCATCTCTTGTGGCTTGTC 307740 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 ||| | |||||||||||| || || || || | ||| || ||||| || | || | Sbjct 307741 TTTGAGCATCGTTAAAGTATGCTGGCACAGTAATGACAGCACGAGTGACCTTTTGTCCCA 307800 Query 7755 GATACGATTCCGCGATATCTTTCA--TTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||| | ||| || ||| | |||| |||||| |||||||| | || || ||||| | Sbjct 307801 AATATGTTTCAGCAATAGCCTTCATCTTTTGG--AGAACCATTGCGGAGATTTCTTCTGG 307858 Query 7813 CGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAAT-CATGGGTTT--ATCCGCAGC 7869 ||||| |||| | || ||||||| ||||||| ||| | || ||| | | | | Sbjct 307859 AGCAAAAACTTTCTTCTCTCCGTTAATTTCAACTTGAATGTAAGGCTTTCCGTTCTTATC 307918 Query 7870 ACCGGGGATAACCTTATACGACCAATCTTTCA-TATCGTCTTGGACCTGTTGGTCCGAAA 7928 | |||| ||| || | ||| || ||| | ||| || | || || | Sbjct 307919 A------ATAATCTTGTATG-GCAAGAGACCAGCATCCTTTTGAACTTCCGTATCAGAGA 307971 Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 | | ||||| || | |||||| ||| |||| ||||| | || || | |||| || Sbjct 307972 AACGACGACCGATGAGTCTCTTTGCGTCATAAACAGTGTTGGTTGGATTGAGAGCTGCTT 308031 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTAC-GAT 8047 ||||||| || || || || || | |||||| | ||| || || || || ||| ||| Sbjct 308032 GGTTCTTGGCTGCTTCACCAATTAAACGTTC---ACCTTCGGTGAAAGCAAC-TACTGAT 308087 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || | ||||| ||||| || || | |||||||| Sbjct 308088 GGTGTAATACGATTACCTTGATCATTGACGATAATTTC 308125 Score = 149 bits (164), Expect = 8e-31 Identities = 440/667 (66%), Gaps = 21/667 (3%) Strand=Plus/Plus Query 6509 TTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTT 6568 |||| ||||||| ||| | || ||| | || | || || | ||| | | ||| Sbjct 306558 TTCAATTGATAAGCATAGCTCTCAAGAGCGTTTCTGGCGTCAATTCTTTCCTTTTGCTTC 306617 Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 | ||||| |||| |||| | || || | |||||| ||||||| || ||| ||| Sbjct 306618 TTGTCTTCTTCTTCGAACTTGGCAGCTTCATTGACCATTCTTTCAATTTCAGCTT--GAT 306675 Query 6629 A-ATCTCCC-CTTATCATTCGTAATCGTAAT-CT-TTTCGGATTTACCCGAGGCCT--TA 6682 || | |||||| || ||||| ||||| || ||| || ||||| || | | || Sbjct 306676 CCATGTTAAGCTTATCGTTGGTAATAGTAATACTATTTTGG--TTACC--AGTCTTGGTA 306731 Query 6683 TCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGT 6742 || | ||| | || | | |||||||| || |||||| ||| | || | ||||||| Sbjct 306732 TCCTTGGCAGTAACGTGGAGAATACCATCAGCGTCAACAGAGAAGGTGACTTCAATTTGT 306791 Query 6743 GGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTA 6802 || ||||| || ||||| | ||||||||| || || || ||| |||| | | | || Sbjct 306792 GGAGTACCTCTTGGTGCTGGTGGAATACCAGTCAATTCGAATTTACCCAACAGGTTATTG 306851 Query 6803 TCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCT 6862 ||| | | | | ||||||||||| ||| |||| ||| || | |||||||||||| Sbjct 306852 TCCTTTGTCATGGCACGTTCACCTTGATAAACTTGAATCAAGACACCTGGTTGATTATCT 306911 Query 6863 TGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACC 6922 || || |||||||||||| || | || ||||||| | ||| ||| ||||| | | Sbjct 306912 TGATATGTAGAGAAGATTTGTGACTTTTGAGTTGGAATCTTAGTACCTCTTGGAATCAAC 306971 Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 |||||||| ||||| | ||||| | || | ||| || | | | || | || Sbjct 306972 TTGGTCATAACTCCACCAACGGTTTCAATACCCAAAGAAAGGGAAGCAATATCAACAAGG 307031 Query 6983 AACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 | | ||||| | | |||| ||| ||| || || | |||| | | || Sbjct 307032 ACAATGTCTTCATCCAATTC---ACCT---CCC---AAAATACCTCCTTGAATAGCAGCA 307082 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 || ||| || || ||||| |||||||| || || | | ||||| || || || Sbjct 307083 CCAGCTGCAACAGCTTCATCAGGGTTAATTCCTTGCTTTGGCTTCTTACCATTGAAGAAA 307142 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 || |||| |||||||| || || |||| || || ||||| || | ||| |||||| Sbjct 307143 TCAATCAACAATTGTTGAACCTTTGGAATTCTAGTAGAACCACCAACAAGAACAATTTCA 307202 Query 7163 TTCACTT 7169 | |||| Sbjct 307203 TCTACTT 307209 >seq36 Length=122865 Score = 174 bits (192), Expect = 2e-38 Identities = 578/891 (65%), Gaps = 15/891 (2%) Strand=Plus/Plus Query 105291 AATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACTTTTC 105350 |||||| |||||||| || || ||||| ||||| |||| | || || || || ||| Sbjct 115490 AATTTCAGTACACAAGTTGGAGGATTTGATCGTTCCAAGATTTTGTTGATTTGATTTTCT 115549 Query 105351 ATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAATAAT 105410 |||||| || || || |||||||| || || || || ||| |||| | | |||||| Sbjct 115550 ATTACATGCATCCTTATAAAGCATGTAAGGAACACCAGTCTCAATTTGTGCCTCAATAAT 115609 Query 105411 TGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTCGTATTT 105470 ||| ||||| ||| ||| | || || ||| ||| || || || Sbjct 115610 TGCAAACCAAAGCTCTTGAGCACGAACGACACGGCGTGCACGACCCTCCTTCTCATAACG 115669 Query 105471 CTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGG 105530 | || | || | |||||||| ||| |||| || | ||| || || | || ||| Sbjct 115670 CAAATACAATTCATTAAACTCTTCACCCCACACATCAGCAAGTCCAGGAGCTTCATTAGG 115729 Query 105531 ACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCA 105590 |||||| | |||||||| | ||| | || | | ||| |||||||| | ||| Sbjct 115730 ACAAAAGAGTGACCAATGAGAATCCTCCTTCACTCTCTCCATAAACAAATCATTCACCCA 115789 Query 105591 CATGGCTGAAAAGAGGTCTCGACACCTCGCCTCT--TCATCACCTTGATTCAAACGAATT 105648 || | |||| | |||||| |||| | | || | || |||| | | Sbjct 115790 CAAACCCAAAAACAAATCTCGAG--CTCGAATTTCCTCCTTTCCAGTATTCTTTCTCAAA 115847 Query 105649 TCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTA 105708 || | |||||| | |||||||| ||||| || || ||||| || |||| | ||||| Sbjct 115848 TCTAAAAAATCAAAAATATCGGAATGCCAAGGCTCCAAATAAACGGCAAAGGCTCCTTTT 115907 Query 105709 CG---ACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGA 105765 || || || |||||| || || | || || ||| | || || | ||| ||| Sbjct 115908 CGTTTACCACCACCTTGATCCACGTAACGGGCAGTGTCGTTGAATACACGAAGCATGGGA 115967 Query 105766 ATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCG 105825 || | |||| ||| ||||| || ||||| ||||| | ||| | ||||| | | Sbjct 115968 ATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAATGTAGGATCCAGAGGCACGAATGTTA 116027 Query 105826 TGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTA 105885 |||||| || || ||||| ||||| | ||| || |||||| || | |||| Sbjct 116028 TGAACGGACAAGCCGATACCACCAGCACTCTTGGATATCAAGGCACACGTCTTGAGTGTA 116087 Query 105886 TCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGT 105945 ||||||||||| || ||| || || | || | | ||| || || |||||| Sbjct 116088 TCGTAAATACCTGAAATGGAATCGTCTTTCATGGCCACTAAGAAGCAAGAACTCATTTGA 116147 Query 105946 GGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGAT 106005 || |||| |||||||||||||| ||||| || | || || ||||||| ||| | | | Sbjct 116148 GGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAGAGGCGTGGATGAACATACCAGT-GCT 116206 Query 106006 AA-CGCTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGCGAC 106064 || |||||| ||||| | | | ||||||||| |||||||| || | | || Sbjct 116207 AAGTAATTCGTAGGTTTCAATAGCCTTCTCAATATCGGAACCATGAATGCCCAAACTCAC 116266 Query 106065 GCGCATATAGAGATATTGGGGT-GTT--TCAATAATTTCACCGTCAATTTTCTGGAGATA 106121 ||||| | | | ||| ||| ||| |||||| || ||| | ||| | | || Sbjct 116267 ACGCATGAACATGTGTTGAGGTCGTTCGGCAATAACATCTCCG---AGTTTGAGCAAGTA 116323 Query 106122 CCCTTTTTCAAGTGTTTTTAAACCAAAATACCCAAACTCAAAATCACGTTC 106172 | | ||||||| || || || ||||| || | || | | |||| ||||| Sbjct 116324 GCTTCTTTCAAGAGTCTTAAAGCCAAAGTAATCGAATTGATAATCTCGTTC 116374 >seq13 Length=365397 Score = 145 bits (160), Expect = 1e-29 Identities = 279/409 (68%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 22441 AAATTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAAT 22500 ||||||||||| || |||| || | |||||| ||| | || ||| ||||| Sbjct 116045 AAATTTTATCAAGCCAGTACAAGTGAATTGTACGGTCTAGTGCAAGAGGTTCCTCAAAAG 115986 Query 22501 GAAAATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGATGGGATATTGG 22560 |||| ||||| || || || ||||||||||||| || |||||| | |||||| Sbjct 115985 GAAACAACACCATTCTATCCTCGTTCACCATATGCCTGTGCCAAATTGTACAGCTATTGG 115926 Query 22561 GCGACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAAC 22620 ||||| ||||||||| | ||| |||||||||| |||||||| |||||||| Sbjct 115925 ATTGTTGTTAACTATAGAGAAGCTTACAACATGTTTGCATTGAATGGTATTTTGTTCAAC 115866 Query 22621 CACGAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCT 22680 |||||||| | || ||| || || ||||| |||| || || | | ||| || Sbjct 115865 CACGAATCGATTCGTCGTGGTCCAACATTTGTGACCAGAAAGATCACCATGGCTGTTGCC 115806 Query 22681 AATATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGAT 22740 ||| | ||| ||| | ||||| || | |||||| | ||||| || ||||| Sbjct 115805 CGTATAAAACTTGGTTTGCAAGATTGTTTGTATTTGGGTAACTTGGATGCTGAAAGAGAT 115746 Query 22741 TGGGGTCATGCACGCGATTACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCG 22800 ||||||||||| ||||| || || |||||| || ||||| ||||| |||| Sbjct 115745 TGGGGTCATGCTAAGGATTATGTTGAAGCCATGTGGCTCATGTTACAGCAAGAGCAACCA 115686 Query 22801 GAAGATTTTGTTATTGCAACAGGCGTAACAACA-ACCGTGAGAGAATTT 22848 |||||| | ||||| || | || |||| | ||| ||||||||| Sbjct 115685 CGTGATTTTTGCGTGGCAACTGGTG-AAAAACATAGCGTCAGAGAATTT 115638 >seq55 Length=84537 Score = 122 bits (134), Expect = 1e-22 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 6668 TTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAAC 6727 || || ||||||||||| ||||||| |||||||||||||| || ||||||| ||| || Sbjct 70454 TTTCCAGAGGCCTTATCCACAGCACTCACATTCAAAATACCGTTGGCATCAATATCAAAG 70513 Query 6728 CTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTA 6787 | || | |||||| || ||| || ||||| | |||||| || || |||||| | Sbjct 70514 GTAACTTCAATTTGAGGAACACCTCTTGGTGCAGGTGGAATTCCGACCAATTCAAATTGA 70573 Query 6788 CCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACC 6847 || | || |||||| | || | | | ||||||| |||||| ||||| ||| Sbjct 70574 CCCAACAACTTGTTATAGGCAGCAATATCTCTCTCACCTTGATAGACCTTAATACCCACT 70633 Query 6848 GCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTA 6907 || ||| ||||| || || ||||||||||| ||||| | |||||| || ||| Sbjct 70634 TGAGTTTGGTTATCAGCAGCAGTCGAGAAGATTTGACTCTTCTTGGTTGGAATGGTTGTA 70693 Query 6908 TT 6909 || Sbjct 70694 TT 70695 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 |||| | ||||| || | ||| || || |||||||| || |||||||| | ||| Sbjct 71540 TATCCAATCCGTAAGCCAAAGCAGCAGCAGTTGGTTCGTTGATAATACGTTCAACCGTCA 71599 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||||||| || | |||||||| || ||||||| ||| |||||||||||||| || | Sbjct 71600 AACCAGCAATGGTACCGGCATCTTTAGTGGCTTGTCTTTGAGAATCGTTAAAGTAAGCTG 71659 Query 7719 GGACCGTTAC 7728 | || || || Sbjct 71660 GAACGGTAAC 71669 >seq260 Length=76778 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 ||||||||||| |||||||| |||| |||||| | | || ||| || || || Sbjct 44154 GAAACATCAAAAGTACCACCTCCCAAGTCAAAGACCAACACATTC------TCTTCCTTC 44101 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| | | ||| || || || || || || || || || || | |||||||| | | Sbjct 44100 TTCTTGTACAAACCATAGGCCATGGCAGCAGCAGTAGGCTCGTTGACAATACGAACAACG 44041 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||| ||||||||| | ||||| || || ||||| ||||| || || || ||| Sbjct 44040 TTCAAACCAGCAATACGACCAGCATCCTTGGTTGCTTGACGTTGTTGGTCATTGAAATAG 43981 Query 7715 GCCGGGACCGT 7725 || || || || Sbjct 43980 GCAGGAACAGT 43970 Score = 84.2 bits (92), Expect = 3e-11 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 6676 GGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATT 6735 ||| | |||||||||| | || || | |||||||| || ||| | | ||| | || || Sbjct 45118 GGCTTGATCTTCAGCAATAACCTTAAGAATACCATCTGTATCCAATTGGAAGATAACCTT 45059 Query 6736 AATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAA 6795 ||||||||| ||| | ||||| | ||||||| | || || | || |||||| || Sbjct 45058 AATTTGTGGAACTCCCTTTGGTGCAGGTGGAATATCAGTCAATTGCAACTCACCAAGCAA 44999 Query 6796 ACTGTTATCCGTCGCCTTCTTACG---TTCACCTTCATAGACTTTAATTGTCACCGCAGG 6852 ||||| | | | | |||| |||||||||||| | | ||||| || || Sbjct 44998 TCTGTTGAACTTGG---TGATACGTCTTTCACCTTCATAAATTGGAATTGACAATTGAGT 44942 Query 6853 TTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCT 6912 ||||| ||| || | || | |||| | || | || |||||| | || ||||| Sbjct 44941 TTGATAATCATGAGTTGTAGTAAAGACATCAGACTTTTCAGTTGGAATTGGAGTGTTTCT 44882 Query 6913 CGGAATAACCGGGGTCATAATACCACCCATAGTTTC 6948 ||||||| | | ||||| ||||| | |||||| Sbjct 44881 TGGAATAATAGTTGCCATAACTCCACCAACAGTTTC 44846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128242922160