Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq36 178 2e-39 seq93 140 4e-28 seq13 89.7 6e-13 >seq36 Length=122865 Score = 178 bits (196), Expect = 2e-39 Identities = 719/1124 (64%), Gaps = 13/1124 (1%) Strand=Plus/Minus Query 111529 GAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGAC 111588 |||| || | || | ||| ||||| | ||||| || || | ||||||| | | | || Sbjct 116370 GAGATTATCAATTCGATTACTTTGGCTTTAAGACTCTTGAAAGAAGCTACTTGCTCAAAC 116311 Query 111589 TGGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCC 111648 | | | ||| | ||| || || ||||||||||||| || | || || | Sbjct 116310 TCGGAGATGTTATTGCCGAACGACCTCAACACATGTTCATGCGTGTGAGTTTGGGCATTC 116251 Query 111649 ATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCA 111708 |||| |||||||| | | | || || ||||| | | ||||||||||| Sbjct 116250 ATGGTTCCGATATTGAGAAGGCTATTGAAACCTACGAATTACTTAGCACTGGTATGTTCA 116191 Query 111709 TCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTT 111768 ||||||| | || || |||||||| |||||||| || | || |||||| |||| || Sbjct 116190 TCCACGCCTCTCCTACTCTCTTCAATGCTGGTACTCCCACTCCTCAAATG---AGTTCTT 116134 Query 111769 TC--CTTATTG-CAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAAT 111825 | |||| || | | || || ||||| || || ||||||| || |||| | Sbjct 116133 GCTTCTTAGTGGCCATGAAAGACGATTCCATTTCAGGTATTTACGATACACTCAAGACGT 116074 Query 111826 GTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCA 111885 ||||| || || ||| | |||||||||||||| || | | ||| | | | ||| Sbjct 116073 GTGCCTTGATATCCAAGAGTGCTGGTGGTATCGGCTTGTCCGTTCATAACATTCGTGCCT 116014 Query 111886 ACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 111945 || ||| |||| || || || || |||| | ||||| |||||||| | Sbjct 116013 CTGGATCCTACATTCGAGGAACCAACGGAACCTCCAATGGACTCATTCCCATGCTTCGTG 115954 Query 111946 TATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCG 112002 |||| |||| ||| || || || || | |||| ||| || || || ||| | | | Sbjct 115953 TATTCAACGACACTGCCCGTTACGTGGATCAAGGTGGTGGTAAACGAAAAGGAGCCTTTG 115894 Query 112003 CAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACC 112062 | || ||| | ||||| ||||| | ||||| | || || | || ||| | || Sbjct 115893 CCGTTTATTTGGAGCCTTGGCATTCCGATATTTTTGATTTTTTAGATTTGAGAAAGAATA 115834 Query 112063 AAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCT 112122 || | ||||| || || ||| | || | | | | ||| | ||| | | Sbjct 115833 CTGGAAAGGAGGAAATTCGAGCTCGAGATTTGTTTTTGGGTTTGTGGGTGAATGATTTGT 115774 Query 112123 TCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCG 112182 | ||| ||||||| ||||| | ||||||| ||||||||||| | | || || | Sbjct 115773 TTATGGAGAGAGTGAAGGAGGATTCTCATTGGTCACTCTTTTGTCCTAATGAAGCTCCTG 115714 Query 112183 GTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAA 112242 | || | |||| |||||| |||||| | | | || || ||| | || Sbjct 115713 GACTTGCTGATGTGTGGGGTGAAGAGTTTAATGAATTGTATTTGCGTTATGAGAAGGAGG 115654 Query 112243 GTCGGGCGA-CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAA 112301 |||| || | | | || | | ||| || | ||| || ||| | || | ||| Sbjct 115653 GTCGTGCACGCCGTGTCGTT-CGTGCTCAAGAGCTTTGGTTTGCAATTATTGAGGCACAA 115595 Query 112302 ACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAA 112361 | ||||||||| || || |||||||| || || || ||||| ||| |||||| Sbjct 115594 ATTGAGACTGGTGTTCCTTACATGCTTTATAAGGATGCATGTAATAGAAAATCAAATCAA 115535 Query 112362 AAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGAC 112421 | ||| | || |||||| |||||| | ||||| ||||| | |||| |||| Sbjct 115534 CAAAATCTTGGAACGATCAAATCCTCCAACTTGTGTACTGAAATTATTGAATACACAGCT 115475 Query 112422 AAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCA 112481 |||||| |||||||||||| | ||| || || || || |||||||| || | Sbjct 115474 CCAGATGAAGTAGCTGTGTGTAACTTGGCAAGTATTGCACTTCCAAAGTATGTCAATG-A 115416 Query 112482 GA-GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAA 112540 || |||| || | ||| ||||| || | ||| || |||| || ||| || || Sbjct 115415 GACGACACGTACCTACGATCATGAACAATTGTTTGAAATTGTCAAAATTGCCACCAAGAA 115356 Query 112541 CCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATAT 112600 | |||| | ||||| | |||| ||| || |||||| ||| | || |||||| Sbjct 115355 TTTGAACAAGATCATTGACAAGAATTATTATCCAGTTGAGGAAGCTAGAAAGAGTAATAT 115296 Query 112601 GAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG 112644 |||||| ||||| |||||| | ||||| || || | || |||| Sbjct 115295 GAGACATCGTCCCATTGGTTTGGGTGTTCAGGGATTGGCCGATG 115252 Score = 104 bits (114), Expect = 3e-17 Identities = 292/443 (66%), Gaps = 14/443 (3%) Strand=Plus/Minus Query 112891 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 112950 ||||||| ||| | | | || ||||||||||| || |||||| ||||| ||||||| Sbjct 114978 TTCGTAATAGTTTACTTGTTGCTCCAATGCCAACTGCATCCACCAGTCAAATTTTGGGTA 114919 Query 112951 ATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAG 113010 |||||||||| ||||| || ||||| |||| | ||| |||| | | | || | Sbjct 114918 ATAATGAATGTTTTGAGCCATACACTTCGAATGTGTATACGAGACGTGTCTTGAGTGGTG 114859 Query 113011 AGTTT---GTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGG- 113066 | | | || ||| |||| ||| | || |||| | | | || | ||| Sbjct 114858 AATATCCAGTCATT---AACAGACATTTAGTATCTGACTTGATTCGTTTGGGAATGTGGA 114802 Query 113067 --TCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTG-TG 113123 || || | |||| | | || | || | ||||| |||||||| |||| || Sbjct 114801 ATTCAAATATTGTGAATCAAATTATTGCCAACA---GAGGTTCTATTCAAAACATTGCTG 114745 Query 113124 GATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGAT 113183 || ||||||||||| |||||| | |||||| || |||||||||||||| ||| | Sbjct 114744 GA-ATTCCAGATGATATTAAGGAATTGTACAAGACTGTTTGGGAAATCAAACAAAAGAGT 114686 Query 113184 GTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTA 113243 | | || | ||| || | | || |||||||||||| |||| | ||| | Sbjct 114685 TTGTTGGATCTTGCCATTGAGAGAGCTCCATTCATTGATCAATCTCAATCACTCAATGTC 114626 Query 113244 TTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAG 113303 || || | | |||| | || ||||| | ||||| |||||| | || ||||| ||| Sbjct 114625 TTTATTGCCACTCCATCCATCTCCAAAATGTCTTCCATGCACTTTTATGCTTGGAGTAAG 114566 Query 113304 GGTCTCAAAACGGGGATGTATTA 113326 || | || || || |||||||| Sbjct 114565 GGATTGAAGACTGGAATGTATTA 114543 >seq93 Length=103736 Score = 140 bits (154), Expect = 4e-28 Identities = 469/707 (66%), Gaps = 36/707 (5%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGAT-TTGGACGATTGGAAGACTCTAAATGA 101875 |||||||||||||| || |||||| | ||| ||| | || |||| ||||| ||| Sbjct 85381 TGGACTGCTGAAGAAGTGGATCTCCACACAGATATTGCTCAATGGGAA-ACTCTCAATAC 85323 Query 101876 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGT 101935 |||||| | | ||||| || | |||| |||||||||| |||||||| ||||| Sbjct 85322 CAATGAACAACACTTCATCAAGACTGTTTTGGCCTTCTTTGCTGCCTCCGATGGTATTGT 85263 Query 101936 TTTTGAGAATATCAAT-AACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTT 101994 |||||| | | ||||| ||| | ||| || ||| ||||||| |||| || Sbjct 85262 GAATGAGAACTTGTGTCAACAA-TTTATGGCTGAAGTTCAAATTCCTGAAGCCAGATGTT 85204 Query 101995 TCTATGCGTATCAA--TGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTC-- 102050 |||||| | ||| || ||| ||| | | |||| |||| || | ||||| Sbjct 85203 TCTATGGATTCCAAATTGCCAT--TGAGAATATTCATGCAGAGATGTAT--TCAACTCTA 85148 Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGA-AGCAGCTCTTTGAAGCCATCCAAAC 102109 || || | || |||||||| || |||| | | ||||| | ||||| | || Sbjct 85147 ATTGAAACCTACATTAAGGACACGAGAGA-AAGACATCGTCTCTTCAATGCCATTGATAC 85089 Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 102169 ||||||| |||||||||| || ||||||| |||| ||| | || ||| Sbjct 85088 TGTTCCATCCGTTCAAAAGAAGGCTCGTTGGGCTTTGAAATGGATC------AACTCGGA 85035 Query 102170 TTCCTT---TGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | ||| |||||| ||| | | || ||||| ||||| || ||||||||||| ||| Sbjct 85034 TAACTTGTTTGCTGAACGATTGATTGCCTTTGCTTGTGTGGAAGGTATCTTCTTTAGTGG 84975 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 || ||||| | || | |||| | |||||| ||||| | ||||| || | |||||| Sbjct 84974 ATCTTTCTGTTCCATCTTTTGGATGAAGAAGAGAGGTTTGATGCCTGGATTGACCTTCTC 84915 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAA 102346 ||| || | || ||||| || || ||| | ||| || ||||| || || || | Sbjct 84914 CAATGAATTGATTTCTCGAGATGAAGGATTACACACGGACTTTGC-TTG--TCTCTTGTA 84858 Query 102347 ATTATTGC-GTATTAAACCAA--CGACT---GAGACTATTCATTCTATTGTTAAG-GAAG 102399 | ||| | || ||||| | || || | | ||||| |||| | || |||| Sbjct 84857 TTCCATGCTCAAATATACCAAATTGCCTCAAAAGGTTGTACATTC-ATTGGTCAGTGAAG 84799 Query 102400 CCGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCC-ATGCGCTCTCATCGGTATG 102458 | |||||||||||||||| |||||| || | || || || || | || |||||| Sbjct 84798 CTGTTGAGATTGAGAAGGAATTCATTCGAGAATCTCTCCCTGTGGACT-TGATTGGTATG 84740 Query 102459 AATTCTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATT 102505 |||||| ||| |||| ||||| | ||| ||||| |||| Sbjct 84739 AATTCTCGTCTCATGCAACAATACATTGAATTTGTTGCTGATCGATT 84693 >seq13 Length=365397 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 13866 TTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATG 13925 ||||||||| | | || || |||||||||||||| || ||||| ||||||||||| ||| Sbjct 115772 TTGGGTAACTTGGATGCTGAAAGAGATTGGGGTCATGCTAAGGATTATGTTGAAGCCATG 115713 Query 13926 TGGCTCATGCTTCAACAAGAGGAA 13949 ||||||||| | || |||||| || Sbjct 115712 TGGCTCATGTTACAGCAAGAGCAA 115689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737946173280