Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq36 201 1e-46 seq93 127 2e-24 seq13 82.4 9e-11 >seq36 Length=122865 Score = 201 bits (222), Expect = 1e-46 Identities = 647/994 (65%), Gaps = 19/994 (2%) Strand=Plus/Plus Query 110065 TCTTCACAGTCGAAGGGAAGAC-CACAAAGAATAAACACATCCGCTAGACCCTGAACACC 110123 ||||||| |||||||||||| || || |||| |||| || | ||||||||||| Sbjct 115215 TCTTCACTCTCGAAGGGAAGATGCATCTTGA-TAAAGGCATCGGCCAATCCCTGAACACC 115273 Query 110124 GAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTT 110183 | ||||||||| ||||| |||| ||| || ||| || || || ||| | || Sbjct 115274 CAAACCAATGGGACGATGTCTCATATTACTCTTTCTAGCTTCCTCAACTGGATAATAATT 115333 Query 110184 GCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTC 110243 ||| |||| | || | |||||| || || | || |||||| | || || Sbjct 115334 CTTGTCAATGATCTTGTTCAAATTCTTGGTGGCAATTTTGACAATTTCAAACAATTGTTC 115393 Query 110244 GTAATCGAACGT---TTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAG 110300 | |||| | || | ||||||| ||||||||| || || || |||||| || | Sbjct 115394 ATGATCGTAGGTACGTGTCGTCTC---ATTGACATACTTTGGAAGTGCAATACTTGCCAA 115450 Query 110301 ATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGA 110360 || ||||||| || ||| | |||||||| | |||||| |||||||||||||| Sbjct 115451 GTTACACACAGCTACTTCATCTGGAGCTGTGTATTCAATAATTTCAGTACACAAGTTGGA 115510 Query 110361 ACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAG 110420 || || || | || | ||||| ||||| || |||||||||||||| || Sbjct 115511 GGATTTGATCGTTCCAAGATTTTGTTGATTTGATTTTCTATTACATGCATCCTTATAAAG 115570 Query 110421 CATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGC 110480 |||||| || |||||| || | |||| || | ||| || ||| | || || Sbjct 115571 CATGTAAGGAACACCAGTCTCAATTTGTGCCTCAATAATTGCAAACCAAAGCTCTTGAGC 115630 Query 110481 GGG---GACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAA 110537 | |||| |||| || |||| |||| ||| || ||||| || | ||| Sbjct 115631 ACGAACGACA-CGGCGT--GCACGACCCTCCTTCTCATAACGCAAATACAATTCATTAAA 115687 Query 110538 TTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATT 110597 || | || ||||||||| ||| || || | | ||||| ||||| ||||||| Sbjct 115688 CTCTTCACCCCACACATCAGCAAGTCCAGGAGCTTCATTAGGACAAAAGAGTGACCAATG 115747 Query 110598 TCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTC 110657 | |||||| || |||| ||| |||| ||| | ||||| || | || | || Sbjct 115748 AGAATCCTCCTTCACTCTCTCCATAAACAAATCATTCACCCACAAACCCAAAAACAAATC 115807 Query 110658 ACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATC 110717 || ||| || || | || || | | || ||||| || | ||||| Sbjct 115808 TCGAGCTCGAATTTCCTCCTTTCCAGTATTCTTTCTCAAATCTAAAAAATCAAAAATATC 115867 Query 110718 CGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTT 110774 || ||||| || || | ||| || || | || ||| || || || ||| | || | Sbjct 115868 GGAATGCCAAGGCTCCAAATAAACGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGATC 115927 Query 110775 AACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACC 110834 || || || || ||| | ||||| || | ||||| ||||| | ||||| ||| || Sbjct 115928 CACGTAACGGGCAGTGTCGTTGAATACACGAAGCATGGGAATGAGTCCATTGGAGGTTCC 115987 Query 110835 ATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACC 110894 || || || | ||| ||| | ||||||||||| || | || || ||||| Sbjct 115988 GTTGGTTCCTCGAATGTAGGATCCAGAGGCACGAATGTTATGAACGGACAAGCCGATACC 116047 Query 110895 ACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCG 110953 ||| || | ||| || |||||| ||| |||||||| | |||||||| ||| | Sbjct 116048 ACCAGCACTCTTGGATATCAAGGCACACGTCT-TGAGTGTATCGTAAATACCTGAAATGG 116106 Query 110954 AATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCAT 111013 |||| | || |||| | || ||||||||| ||| |||||| || || || |||| Sbjct 116107 AATCGTCTTTCATGGCCACTAAGAAGCAAGAACTCATTTGAGGAGTGGGAGTACCAGCAT 116166 Query 111014 TGAAGAGTGTAGGTGTCGCATGAATGAACAGACC 111047 ||||||| ||||| | || || ||||||| ||| Sbjct 116167 TGAAGAGAGTAGGAGAGGCGTGGATGAACATACC 116200 Score = 107 bits (118), Expect = 2e-18 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTT 109472 ||||||||| || || || | || |||| || || | ||||| ||||| | ||| Sbjct 114542 ATAATACATTCCAGTCTTCAATCCCTTACTCCAAGCATAAAAGTGCATGGAAGACATTTT 114601 Query 109473 GGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACC 109532 ||| | | ||| | | ||||| | || | || ||||| ||||| |||||| || | Sbjct 114602 GGAGATGGATGGAGTGGCAATAAAGACATTGAGTGATTGAGATTGATCAATGAATGGAGC 114661 Query 109533 ACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAA 109592 | ||| || | || | | || |||||| | |||||||| |||||||||||||| Sbjct 114662 TCTCTCAATGGCAAGATCCAACAAACTCTTTTGTTTGATTTCCCAAACAGTCTTGTACAA 114721 Query 109593 ATTCTTGATATCATCGGGAATGTCCA-CGATGTTTTGAATAGAGCC 109637 | ||| |||||||| ||||| |||| | |||||||||||||| || Sbjct 114722 TTCCTTAATATCATCTGGAAT-TCCAGCAATGTTTTGAATAGAACC 114766 >seq93 Length=103736 Score = 127 bits (140), Expect = 2e-24 Identities = 351/532 (66%), Gaps = 6/532 (1%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 |||||||| ||||| || | ||||| |||| | ||||||||| | ||||| ||| Sbjct 84888 CCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCAGGCATCAAACCTCTCTTC 84947 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || | ||||||||||| ||| ||| |||| ||||||||| || |||||||| || || Sbjct 84948 TTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATACCTTCCACACAAGCAAAG 85007 Query 119634 GCGAATAGACGCTCAGCAAA-AGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGTTGGC 119692 || | | || |||||||| | || | | || || ||| || | |||||| || Sbjct 85008 GCAATCAATCGTTCAGCAAACAAGT-TATCCGAGTTGATCCATTTCAAAGCCCAACGAGC 85066 Query 119693 CTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGCACC 119752 ||| | | | | || ||||| | ||||| | ||| || | | |||| Sbjct 85067 CTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGAGACGATGTCTTTCTCTCGT 85126 Query 119753 ATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCATTGTG 119812 |||||||| || | ||||| || | || || |||| |||||| | ||| || Sbjct 85127 GTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCTCTGCATGAATATTCTCAATGGC 85186 Query 119813 TGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTC-GTCAGCAAAATTGT 119871 || | |||| || | | ||||| | |||||| ||||| | || ||||||| Sbjct 85187 AATTTGGAATCCATAGAAACATCTGGCTTCAGGAATTTGAACTTCAGCCA--TAAATTGT 85244 Query 119872 TG-TTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACTTT 119930 || | || ||| ||||| |||||||| |||| ||||| || || | ||| Sbjct 85245 TGACACAAGTTCTCATTCACAATACCATCGGAGGCAGCAAAGAAGGCCAAAACAGTCTTG 85304 Query 119931 ATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACAAGTCC 119990 ||||| | |||||||| ||||| |||| ||| | | |||||| | | ||| Sbjct 85305 ATGAAGTGTTGTTCATTGGTATTGAGAGTTTCCCATTGAGCAATATCTGTGTGGAGATCC 85364 Query 119991 ACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCAAA 120042 || |||||||| |||||| ||| | ||||| || || | ||||||| Sbjct 85365 ACTTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTCTTGTACATCTCCCAAA 85416 >seq13 Length=365397 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 31329 GAGATTGGGGTCATGCGAAGGACTACGTGGAGGCCATGTGGCTCATGCTTCAACAAGAAC 31388 |||||||||||||||| ||||| || || || ||||||||||||||| | || ||||| | Sbjct 115750 GAGATTGGGGTCATGCTAAGGATTATGTTGAAGCCATGTGGCTCATGTTACAGCAAGAGC 115691 Query 31389 GTCCAGATGATTATGTCGTCGCAACAGGTAAATCACAT 31426 ||| ||||| | ||| ||||| ||| || |||| Sbjct 115690 AACCACGTGATTTTTGCGTGGCAACTGGTGAAAAACAT 115653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971774097200