Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq36 246 4e-60 seq93 152 6e-32 seq139 93.3 5e-14 seq13 93.3 5e-14 >seq36 Length=122865 Score = 246 bits (272), Expect = 4e-60 Identities = 631/958 (66%), Gaps = 7/958 (1%) Strand=Plus/Plus Query 106271 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 106330 ||||| |||| || | || ||||||||||||||||| || | |||| ||||||| | Sbjct 115245 ATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGACGATGTCTCATATTACTC 115304 Query 106331 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 106390 |||| || |||||| |||||| |||| ||||||||| ||| | ||| ||||| Sbjct 115305 TTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATCTTGTTCAAATTCTTGGTG 115364 Query 106391 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 106450 |||| || |||||| | || ||||| ||| | || || ||| ||||||||| Sbjct 115365 GCAATTTTGACAATTTCAAACAATTGTTCATGATCGTAGGTACGTGTCGTCTCATTGACA 115424 Query 106451 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 106510 ||||||||||| || || |||||| || || ||||| ||||| | ||||||| Sbjct 115425 TACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGCTACTTCATCTGGAGCTGTGTAT 115484 Query 106511 TCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTC 106570 || | |||||| |||||||||||||| || ||||| || | ||| | ||| || Sbjct 115485 TCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGTTCCAAGATTTTGTTGATTTGAT 115544 Query 106571 TTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTG 106630 ||| | || || |||||||| || |||||||| || || ||||| | |||| || Sbjct 115545 TTTCTATTACATGCATCCTTATAAAGCATGTAAGGAACACCAGTCTCAATTTGTGCCTCA 115604 Query 106631 AGAATTGCCTTCCACACATCGGCGGCTGGTAC--AATGGCGTTGGCCCGTCCCTCCGCCT 106688 | |||||| ||| | || || | || | ||||| || || |||||| || Sbjct 115605 ATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACGGCGT--GCACGACCCTCCTTCT 115662 Query 106689 CGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT 106748 | || || | | | |||||| |||||| | | || | || || || || | Sbjct 115663 CATAACGCAAATACAATTCATTAAACTCTTCACCCCACACATCAGCAAGTCCAGGAGCTT 115722 Query 106749 TGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTG 106808 | ||||| || || ||||| ||| | |||||| || | || ||| || | || Sbjct 115723 CATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCACTCTCTCCATAAACAAATCAT 115782 Query 106809 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868 | ||||| |||| | ||||| | ||| || || | || || || Sbjct 115783 TCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTTCCTCCTTTCCAGTATTCTTTC 115842 Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 || || | || || | ||||| | ||||| ||||| | ||| || || | | || Sbjct 115843 TCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTCCAAATAAACGGCAAAGGCTC 115902 Query 106929 CCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 | ||||| || ||| |||||| || || || || ||| |||| ||||| ||||||| Sbjct 115903 CTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAGTGTCGTTGAATACACGAAGCA 115962 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 107045 | ||||| | |||| || || || || || ||||| ||| | ||| | | Sbjct 115963 TGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAATGTAGGATCCAGAGGCACGAA 116022 Query 107046 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 107105 | ||| | | || || ||||| ||||| | ||| || || |||||| | | | Sbjct 116023 TGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGATATCAAGGCACACGTCTTGA 116082 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 | || | || ||||| || || || || || |||| | | ||||||| || Sbjct 116083 GTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATGGCCACTAAGAAGCAAGAACTCA 116142 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223 | || || | || ||||||||||||||||| || || | ||||| ||||||||||| Sbjct 116143 TTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAGAGGCGTGGATGAACATACC 116200 >seq93 Length=103736 Score = 152 bits (168), Expect = 6e-32 Identities = 351/520 (68%), Gaps = 13/520 (3%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| ||| ||| | || |||||||| ||||| | |||||| |||||| | || Sbjct 84870 GCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCA 84929 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||| | |||||||| |||| | || | ||||| || || ||||||||| Sbjct 84930 GGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATA 84989 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 || |||||||| ||||| |||| | || || || || || | | | || | | Sbjct 84990 CCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAACAAGTTA---TCCGAGTTGATC 85046 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TTCAAA 117512 ||||||| ||||| |||||||| | || |||| ||||| | ||||| || || Sbjct 85047 CATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAG 85106 Query 117513 TAACTGCTTCTTT-TCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 117571 || ||||| || | ||||||||||| | ||||| | ||||||| | | Sbjct 85107 AGACGATGTCTTTCTCTCGT--GTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCT 85164 Query 117572 CGCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTAT 117629 | |||||| | ||| |||||| ||| || | ||||| | | ||||| || Sbjct 85165 CTGCATGAATATTCTCA--ATGGCAATTTGGAATCCATAGAAACATCTGGCTTCAGGAAT 85222 Query 117630 CTGCACTTCATCCGCAAAATTGTT-ATTGATATTCTCAAAAACAATTCCATCGGACCCAG 117688 || |||||| || |||||||| | | |||||| ||||| |||||||| ||| Sbjct 85223 TTGAACTTCAGCC-ATAAATTGTTGACACAAGTTCTCATTCACAATACCATCGGAGGCAG 85281 Query 117689 CAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGT 117748 ||||||| |||| | ||| ||||| | | |||||| ||| || || | ||| | Sbjct 85282 CAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTGTTCATTGGTATTGAGAGTTTCCCATT 85341 Query 117749 CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 ||| |||| || | ||| |||||||| |||||||| Sbjct 85342 GAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCA 85381 >seq139 Length=139714 Score = 93.3 bits (102), Expect = 5e-14 Identities = 177/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 155036 ATGGTGTGTATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAG 155095 ||||| ||||| | ||||| ||||| || || | ||||||||| || || | | Sbjct 139269 ATGGTTATTATGGAAGAGTTGCTCCACGTTCGGGATTGGCTGTGAAGAATTTCATAGATG 139328 Query 155096 TTGGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATC 155155 ||||||| |||||| | ||| |||| |||| ||| | | ||| | | ||||| | Sbjct 139329 TTGGTGCAGGTGTTGTAGATTCCGATTATAGAGGAAATTTGGGAGTGTTGTTATTCAACC 139388 Query 155156 ACGGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGC 155215 | || || |||||||| | | || ||| || || || |||||| |||| |||||| Sbjct 139389 ATGGTGATGAAGACTTTAAAATTGCGAGAGGAGACCGAATTGCACAATTTGTGATTGAGC 139448 Query 155216 GCTGTGAAACACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACAGAGAGAGGTGCGG 155275 || || ||| | | ||| ||| || | | || || || || |||| || | Sbjct 139449 AAATTGCTTTGCCAGATATTGTAGAAGTTGATGATTTGGATGAAACGGAACGAGGAGCAG 139508 Query 155276 GTGGATTTGGATCTACTGGCG 155296 | ||||||||||| ||||||| Sbjct 139509 GCGGATTTGGATCCACTGGCG 139529 >seq13 Length=365397 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 7173 TTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCCATG 7232 ||||||||| | | || || |||||||||||||| || ||||| ||||||||||||||| Sbjct 115772 TTGGGTAACTTGGATGCTGAAAGAGATTGGGGTCATGCTAAGGATTATGTTGAAGCCATG 115713 Query 7233 TGGCTCATGCTTCAACAAGAGGAA 7256 ||||||||| | || |||||| || Sbjct 115712 TGGCTCATGTTACAGCAAGAGCAA 115689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589976566887760