Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq133 185 1e-41 >seq133 Length=156489 Score = 185 bits (204), Expect = 1e-41 Identities = 504/752 (67%), Gaps = 16/752 (2%) Strand=Plus/Minus Query 154361 ATTCAATAAGTATCATAGTGAAACTGACATGATGAGATATATCTACGAGTTATGCTCTAA 154420 ||| || |||||||| | |||| || ||||||||||||||| | | | |||| Sbjct 126184 ATTTAACAAGTATCACACTGAACATGCAATGATGAGATATATCAAGAAACTCGAAACTAA 126125 Query 154421 AGATT--TCTCATTAGTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAAT 154478 || | |||| | || | |||||| ||||| | || ||| || |||||||| ||| Sbjct 126124 GGACTATTCTCTCT-GTCAC-GGTATGATTCCATTGGGTTCTTGTACTATGAAATTGAAT 126067 Query 154479 GCAGCAGCAGAACTAATGCCTGTGTCATGGGAAGAGTT-TGCTAACGTGCATCCACATAC 154537 || ||| | | | || || || ||||| |||||| | || | | || |||| | Sbjct 126066 GCTGCAAGTGTAATGATTCCAGTTACATGGCCAGAGTTCTCCTCAATT-CACCCACTTGT 126008 Query 154538 ACCTAT-GATACAGACCATGGGTTATCAGAAAATTATAGATGACTTACAGAAAT-GGTTA 154595 ||| | ||| || | | ||| |||| ||||| || |||| || ||| | |||| Sbjct 126007 TCCTCTTGATCAAG-CTAAGGGCTATCTCAAAATGATTAATGATTTG-AGAGTTTGGTTG 125950 Query 154596 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 154655 || | | || || |||||| ||||| |||||||| || || ||||| ||||| Sbjct 125949 AGTCAAGTTACTGGTTTTGATGACTGCTCATTGCAACCTAATGCTGGTTCACAAGGTGAA 125890 Query 154656 TATGCAGGACTGTTAGCAATCCAAGCATACCATCA-AGGATCAGGAGATGATAAAAGAAA 154714 ||||| || |||||| || |||| | || || | || | | ||| | Sbjct 125889 TATGCTGGCTTGTTAGTCATTATGAAATACTTGGAGAGTATTGGCCAATC-TCACAGACA 125831 Query 154715 TGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGG 154774 |||||||||||| |||| || || || || || ||||| || |||||||||| || Sbjct 125830 TGTATGTTTGATTCCAGCATCCGCTCACGGTACAAATCCAGCATCTGCTGTCATGTGCGG 125771 Query 154775 GATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGA 154834 ||||||||||| | ||| | |||||| | ||||||| | || |||| || | | Sbjct 125770 TATGAAAGTTGTCGTTGTTGAATGTGATAAGCATGGTAATGTTGATGTCAATGACTTGAA 125711 Query 154835 GAAGAAAGCAATCATGAATACATTTGAACTGTCA-TGTATT-ATGATTACATACCCATCT 154892 | ||| || | |||| ||| | ||| || ||| |||||||| || ||||| Sbjct 125710 GGTGAA-GCTTGC-TGAAAACAAGGACAATGTTGCTGCATTGATGATTACTTATCCATCG 125653 Query 154893 ACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGT 154952 ||||||||||| | ||| | ||| | | || ||| | |||||||| |||| Sbjct 125652 ACACATGGTGTCTACGAAGAGAGTATTCAAGAAATTTGTCGCTTGGTTCATGAAGCTGGT 125593 Query 154953 GGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGT 155012 | ||| || ||| | |||||||| || | ||||| || || || || || ||| | Sbjct 125592 GCTCAAGTTTATTTGGATGGAGCCAACATGAATGCTCAAGTTGGTCTCACATCACCTGGA 125533 Query 155013 GAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGA 155072 || |||||| || |||||||| || || | || || ||||| ||||||||| || Sbjct 125532 AAGATTGGTGCTGACGTATGTCACCTTAATCTTCACAAGACATTTGCTATTCCACACGGT 125473 Query 155073 GGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| ||||| || || ||||| || |||| Sbjct 125472 GGTGGTGGTCCAGGTGTTGGTCCAATTTGTGT 125441 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 153267 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 153326 ||||| | ||||| || | |||||||| |||||||||||||| ||||| |||||| | Sbjct 127317 AATCCAGGCTGGTATACTCCATACACTCCATATCAAGCTGAGATTTCTCAAGGAAGACTT 127258 Query 153327 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAAC 153386 ||| | || | || || ||||| | || | || | || ||| | ||||| || || Sbjct 127257 GAATCCTTGCTTAACTATCAAACAGTTATTTCCGATTTGACTGGACTTCCAATTGCGAAT 127198 Query 153387 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || | || ||||||| ||||| ||||||||||| ||| Sbjct 127197 GCTTCCTTGTTGGATGAAGGTACTGCTGCAGCAGAAGCTATG 127156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579208644148160