Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq133 194 2e-44 >seq133 Length=156489 Score = 194 bits (214), Expect = 2e-44 Identities = 506/752 (67%), Gaps = 16/752 (2%) Strand=Plus/Minus Query 159036 ATTTAAAAAATATCATAGTGAGACTGACATGATGAGATATATCTATGAGTTAGCATCAAA 159095 |||||| || ||||| | ||| || ||||||||||||||| | | | | | | || Sbjct 126184 ATTTAACAAGTATCACACTGAACATGCAATGATGAGATATATCAAGAAACTCGAAACTAA 126125 Query 159096 AGATT--TCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAAC 159153 || | |||| | || | |||||| ||||| | ||| ||||||||||||| | || Sbjct 126124 GGACTATTCTCTCT-GTCAC-GGTATGATTCCATTGGGTTCTTGTACTATGAAATTGAAT 126067 Query 159154 GCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTT-TGCTAACGTGCATCCACATAC 159212 || ||| | | |||| || || ||||| |||||| | || | | || |||| | Sbjct 126066 GCTGCAAGTGTAATGATTCCAGTTACATGGCCAGAGTTCTCCTCAATT-CACCCACTTGT 126008 Query 159213 ACCTAT-GATACAGACCATGGGTTATCAAAAAATTATAGATGACTTACAGAAAT-GGTTA 159270 ||| | ||| || | | ||| |||| ||||| || |||| || ||| | |||| Sbjct 126007 TCCTCTTGATCAAG-CTAAGGGCTATCTCAAAATGATTAATGATTTG-AGAGTTTGGTTG 125950 Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330 || | | || || |||||| ||||| |||||||| || || ||||| ||||| Sbjct 125949 AGTCAAGTTACTGGTTTTGATGACTGCTCATTGCAACCTAATGCTGGTTCACAAGGTGAA 125890 Query 159331 TATGCAGGACTGTTAGCAATCCAAGCATACCATCA-AGGATCAGGAGATGATAAAAGAAA 159389 ||||| || |||||| || |||| | || || | || | | ||| | Sbjct 125889 TATGCTGGCTTGTTAGTCATTATGAAATACTTGGAGAGTATTGGCCAATC-TCACAGACA 125831 Query 159390 TGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGG 159449 |||||||||||| |||| || || || || || ||||| ||||| || || ||| || Sbjct 125830 TGTATGTTTGATTCCAGCATCCGCTCACGGTACAAATCCAGCATCTGCTGTCATGTGCGG 125771 Query 159450 GATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGA 159509 ||||||||||| | ||| | |||||| | |||| || | || |||| || | | Sbjct 125770 TATGAAAGTTGTCGTTGTTGAATGTGATAAGCATGGTAATGTTGATGTCAATGACTTGAA 125711 Query 159510 GAAGAAAGCAATCATGAATACATTTGAACTGTCA-TGTATT-ATGATTACATATCCATCT 159567 | ||| || | |||| ||| | ||| || ||| |||||||| |||||||| Sbjct 125710 GGTGAA-GCTTGC-TGAAAACAAGGACAATGTTGCTGCATTGATGATTACTTATCCATCG 125653 Query 159568 ACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGT 159627 ||||||||||| | ||| | || | | || ||| | |||||||| |||| Sbjct 125652 ACACATGGTGTCTACGAAGAGAGTATTCAAGAAATTTGTCGCTTGGTTCATGAAGCTGGT 125593 Query 159628 GGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGT 159687 | ||| || ||| | ||||| || || | ||||| || || ||||| || ||| | Sbjct 125592 GCTCAAGTTTATTTGGATGGAGCCAACATGAATGCTCAAGTTGGTCTCACATCACCTGGA 125533 Query 159688 GACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGA 159747 | |||||| || |||||||| || || | || |||||||| ||||||||| || Sbjct 125532 AAGATTGGTGCTGACGTATGTCACCTTAATCTTCACAAGACATTTGCTATTCCACACGGT 125473 Query 159748 GGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| ||||| || || ||||| ||| |||| Sbjct 125472 GGTGGTGGTCCAGGTGTTGGTCCAATTTGTGT 125441 Score = 104 bits (114), Expect = 3e-17 Identities = 138/188 (73%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 ||||| | ||||| || | |||||||| |||||||||||||| ||||| |||||| | Sbjct 127317 AATCCAGGCTGGTATACTCCATACACTCCATATCAAGCTGAGATTTCTCAAGGAAGACTT 127258 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAAC 158061 ||| | || | || || ||||| | || | || | || ||||| || || || || Sbjct 127257 GAATCCTTGCTTAACTATCAAACAGTTATTTCCGATTTGACTGGACTTCCAATTGCGAAT 127198 Query 158062 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTGTTAGCATATAATTC 158120 || || | || ||||||| ||||| ||||||||||| || |||||| | ||||| | Sbjct 127197 GCTTCCTTGTTGGATGAAGGTACTGCTGCAGCAGAAGCTATGGCTGTTTG-TTATAACGC 127139 Query 158121 T-ACAAGA 158127 | |||||| Sbjct 127138 TCACAAGA 127131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588046980732640