Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq42 206 6e-48 seq29 199 9e-46 seq82 149 1e-30 seq76 131 4e-25 seq38 125 2e-23 seq151 116 8e-21 seq26 104 5e-17 seq66 93.3 9e-14 >seq42 Length=292872 Score = 206 bits (228), Expect = 6e-48 Identities = 176/217 (81%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||||||||||||||||||||| |||||||||||||| |||||||||| || ||||| || Sbjct 166383 TCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAGAGGGTTCTTCC 166324 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| | |||||||| ||||| || | || |||||||||||||||||||||||| || Sbjct 166323 ATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTT 166264 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 ||||| || ||| |||||| ||||| ||||| || ||| ||||| | |||| Sbjct 166263 ATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACTTCCAATGTAAT 166204 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| || ||||||||||| || || | ||||||| Sbjct 166203 GGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 166167 Score = 178 bits (196), Expect = 3e-39 Identities = 177/225 (79%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||||||||||||||| | ||| | || || ||||||||||| |||||||| | |||| | Sbjct 165933 TCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAG-G 165875 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| | ||||| || || ||||| |||| |||||||||||| ||||| | Sbjct 165874 TTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTC 165815 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC--CGAACTTTCCACTTC 195095 |||| |||||||| || ||| || ||||| |||||||| || | || || || || Sbjct 165814 CTTCCTTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGAC--TCAACCTC 165757 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| |||| |||||||| ||||| ||||| ||||| | |||||| Sbjct 165756 AAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 129 bits (142), Expect = 1e-24 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| | |||||| || | ||| |||||||| || ||||| || ||||| |||| |||| | Sbjct 165705 TCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAG-G 165647 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| | || ||||| || || || | |||||||| || || ||||| | Sbjct 165646 TTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGGAATTC 165587 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| |||||||| || || || ||||||||||| ||||| ||| ||||| | Sbjct 165586 CTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCGACTTCGA 165527 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || | ||||| || || | || || ||||| | |||||| Sbjct 165526 GAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165484 >seq29 Length=427163 Score = 199 bits (220), Expect = 9e-46 Identities = 178/223 (80%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||| ||||||||||||||| || || ||||| || |||||||||| ||| || Sbjct 49270 TCTTAATCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGAAAGGGT 49211 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | |||||||| ||||| || | |||||||| ||||| ||||| || Sbjct 49210 TCTGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATCCC 49151 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || |||||||| ||| |||||||||||| || ||||| | ||| ||||| | Sbjct 49150 CTCCTTATCTTGAATCTTTGACTTGACGTTCTCGATTGTGTCGTTAGATTCAACTTCCAA 49091 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | |||||||||||||||||||| ||||| | ||||||| Sbjct 49090 AGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCATT 49048 >seq82 Length=211372 Score = 149 bits (164), Expect = 1e-30 Identities = 169/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| | |||||| || | ||| | || || || |||||||| ||||| || | |||| | Sbjct 147711 TCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGACAAG-G 147769 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| |||||||| | ||||| || || ||||| | || |||||| ||||||||||| | Sbjct 147770 TTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATAC 147829 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||||||||| ||| |||||| ||||| |||||||| ||| || || | Sbjct 147830 CTTCCTTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGACCTCCA 147889 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||||| || ||||| || || ||||| | ||||||| Sbjct 147890 AAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATT 147933 >seq76 Length=223365 Score = 131 bits (144), Expect = 4e-25 Identities = 126/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | ||| |||||||| || |||||||| ||||| || | | || Sbjct 84293 TCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGT 84352 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | |||||||| || || || | || |||||| ||||||||||| || Sbjct 84353 TCTGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGAATACC 84412 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||| |||||||| || ||| ||| || ||||| |||||||| Sbjct 84413 TTCCTTGTCTTGGATCTTTGACTTCACATTCTCGATGGTGTC 84454 >seq38 Length=237352 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||||||||| | ||| |||||||| || |||||||| ||||| ||| | ||| Sbjct 109070 TCTGAGTCTCAAAACCAAGTGTAGAGTGGAATCCTTTTGAATGTTGTAGTCGCTCAAAGT 109129 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | |||||||| || ||||||| || |||||| || | |||||| || Sbjct 109130 TCTTCCATCCTCCAATTGCTTACCAGCAAAGATAATTCTTTGTTGATCCGAAGGAATACC 109189 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || || ||| || ||| || ||||||| ||||| | || | || | Sbjct 109190 ATCCTTTTCAAAAATCTTACTCTTTACACTCTCAATAGTGTCATTCATCTCTGCCTCCAA 109249 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || |||||| | || || | |||||| Sbjct 109250 AGTGATTGTTTTTCCAGTTAAAGTTCTCACAAAGAGTTGCAT 109291 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| || | ||||||||| | || ||||| | ||||||||| | | |||||| || Sbjct 109304 TCTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCGATAAAGTTCTTCC 109363 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||| || | || || || || | || | |||||||| || | ||||||||||| || Sbjct 109364 ATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGGAATGCCTTCCTT 109423 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC--CGAACTTTCCACTTCAAGGGTA 195102 ||| ||||| || || || |||||||| | ||| | || || || || | || Sbjct 109424 ATCTGTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGAC--TCAACATCCAATGTG 109481 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | || | ||||| | ||||| ||||| | |||||||| Sbjct 109482 ATTGTTCTACCTGTAAGTGTTTTAACGAATAATTGCATTT 109521 >seq151 Length=76492 Score = 116 bits (128), Expect = 8e-21 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||||||||| || | ||| || |||||||| | | || || | || ||||| Sbjct 51254 AGTCTCAAAACAAGATGGATAGTTGAATCTTTTTGCAAGCTATAGTCAGAAACTGTTCTT 51195 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || | || || || ||| | || | |||||||| || | ||||| ||||| Sbjct 51194 CCATCCTCCAATTGTTTTCCAGCGTAAATTAAACGTTGTTGATCCGCTGGAATACCTTCC 51135 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC--CGAACTTTCCACTTCAAGGG 195100 || || ||| ||| ||| ||||||||||| | ||| | || || |||||| | Sbjct 51134 TTATCACAAATCTTTCTCTTCACGTTCTCAATCGAGTCATTGGAC--TCTGCTTCAATCG 51077 Query 195101 TAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | | ||||||||||||||||| || ||||| | |||||| Sbjct 51076 TGATGGTCTTTCCTGTCAAAGTCTTGACGAATAATTGCAT 51037 >seq26 Length=133099 Score = 104 bits (114), Expect = 5e-17 Identities = 157/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCC 194983 |||||| || | || | || || || || |||| ||||||| | |||| ||||| | Sbjct 73277 TCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGACAAG-GTTCTTC 73219 Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 |||| || | || || |||||||| || | ||||||||| || | ||||| ||||| | Sbjct 73218 CATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGGAATCCCTTCCT 73159 Query 195044 TGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC--CGAACTTTCCACTTCAAGGGT 195101 | || ||||| |||||||||||| || | ||| | || || ||||| | ||| Sbjct 73158 TATCGGCTATTTTGCTCTTGACGTTCTCGATCGAGTCATTGGAC--TCTACTTCCAAGGT 73101 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || ||||| ||||| || || | |||||| Sbjct 73100 AATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCAT 73062 >seq66 Length=52705 Score = 93.3 bits (102), Expect = 9e-14 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||||||||||||||||| || || |||||| ||||||||| | || | |||| || Sbjct 305 TCTCAAAACAAGGTGAATGGTCGA--GTTTTTGTTAATTGTAATCAGAAACACTTCTTCC 248 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||| || | || || || || |||| | |||||||| |||| ||||| || ||||| Sbjct 247 ATCCTCTAATTGTTTTCCAGCATAGATTAAACGTTGTTGATCTGCTGGAATACCCTCTTT 188 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074 |||| ||| || |||| ||||| || || Sbjct 187 GTCTGCAATCTTGCGCTTTACGTTGTCTAT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109473440456258