Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq157 111 2e-19 >seq157 Length=153911 Score = 111 bits (122), Expect = 2e-19 Identities = 331/496 (67%), Gaps = 16/496 (3%) Strand=Plus/Plus Query 104959 tttAGATTCTTGTGGATTTCACTT-TCGAAAAGAAGGTGATTTAGGACCAATTTATGGAT 105017 ||||||||| |||||| ||| ||| |||| |||||||||||| | ||||||| Sbjct 125058 TTTAGATTCCATTGGATTG-ACTCATCGTGAAGAGATGGATTTAGGACCAGTCTATGGAT 125116 Query 105018 TTCAATGGAGACATGCTGGAGCTCAATATATCGACTGTG-ATACCGACTATACCGGCCAA 105076 |||||||||||||| || || || ||| || || |||| | ||| | || Sbjct 125117 TTCAATGGAGACATTGGGGTGCACACTATGAA-ACCATGCATACTAATTATTCTCAAAAA 125175 Query 105077 GGTATAGACCAATTAAGTCAAGT-TATAGAAACTATAAAAAATAACCCCGGGTGTCGAAG 105135 ||||| || ||||| | |||| | | || || || | || || ||| || Sbjct 125176 GGTATTGATCAATTGAAA-AAGTGTGTCGATACCATTCGTCACAATCCAACCAATCGTAG 125234 Query 105136 AATAATTATAGATAGTTGGAATGTGTCACAATTATCAGATATGGCTCTTCCACCGTGTCA 105195 ||| ||| | | |||||||| ||| | ||| | | ||||| |||||||| ||||| Sbjct 125235 AATTATTCTCTCTGCATGGAATGTTTCAGATTTACCTCAAATGGCACTTCCACCTTGTCA 125294 Query 105196 TTGTTTGGTACAATTTTACAT---TAGAAATAAA-ATTTATTTAGATTGTCAATTGTATC 105251 || || ||||| | | || | ||| | | ||| || ||||||| |||||| Sbjct 125295 TTTATTATGTCAATTCTGGGTGGATACAGATACACAAGAATTGAG-TTGTCAAATGTATC 125353 Query 105252 AAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGGTTTCTATTCATTTTTG- 105310 ||||||| ||| | || ||||| ||||| | |||||||| | |||| | || ||| Sbjct 125354 AAAGATCATGTGATATGGGTTTAGGAGTACCTTTTAATATTGCATCCTATGCTTTATTGA 125413 Query 105311 -GTGTGTGTTCTCTCAAAATGGTGTAATCTAACCCCCGGAAAATTTATTCATACTTTTGG 105369 ||| || | | ||| ||| | | || || || | ||| | ||| || ||| Sbjct 125414 CTTGTATGATGGCACAAGTATGTGGATTGAAA--CCAGGTGATTTTGTACATTGTTGTGG 125471 Query 105370 AGATGTTCATGTATATTCTAACCATGTTGACCAATTAAAAATTCAATTAAACAGAAA-AC 105428 ||| |||||| ||||| || ||| |||| | ||| ||| | |||||| | ||||| | Sbjct 125472 TGATTGTCATGTCTATTCGAATCATATTGAACCATTGAAAGTACAATTAGAGAGAAATCC 125531 Query 105429 CTTACACCTTCCCAAA 105444 | |||| |||| ||| Sbjct 125532 CAAACACTTTCCAAAA 125547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658398475957040