Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq36 203 4e-47 seq93 188 8e-43 seq40 123 3e-23 >seq36 Length=122865 Score = 203 bits (224), Expect = 4e-47 Identities = 1116/1788 (62%), Gaps = 62/1788 (3%) Strand=Plus/Plus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| || ||||| ||||||||||| |||||||| || || |||||| |||| || Sbjct 114525 GCTGGTTGTGTTCTCAAATAATACATTCCAGTCTTCAATCCCTTACTCCAAGCATAAAAG 114584 Query 47064 TGCATACTAGTTAATTTAGA-ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACT 47122 ||||| || | ||| || || | | | | |||| | ||| || |||||| Sbjct 114585 TGCATGGAAGACATTTTGGAGATGGATGGAGTG-GCAATAAAGACATTGAGTGATTGAGA 114643 Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 |||||||| |||| | |||| ||| || | ||| || | | | ||||| || || Sbjct 114644 TTGATCAATGAATGGAGCTCTCTCAATGGCAAGATCCAACAAACTCTTTTGTTTGATTTC 114703 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGTA---TTTTGAATAGA 47239 ||| || || || || | || ||||| || ||||| | || | ||||||||||| Sbjct 114704 CCAAACAGTCTTGTACAATTCCTTAATATCATCTGGAATTCCAGCAATGTTTTGAATAGA 114763 Query 47240 TCCTCCgttttctataattttgtt-------ttttaattc-atttgaccaaagttttcgt 47291 |||| ||| | ||||||| || ||| ||||| | | ||||| || Sbjct 114764 ACCTCTGTTGGCAATAATTTGATTCACAATATTTGAATTCCACATTCCCAAACGAATCA- 114822 Query 47292 tcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTA 47351 ||| | | | |||| | | | |||| | | || |||| ||| | || | Sbjct 114823 --AGTCA--GATACTAAATG-TCTG--TTAATGACTGGATATTCACCACTCAAGACACGT 114875 Query 47352 CGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCA 47411 | |||| | ||| || ||||| || | | |||||||||| || ||||||||| Sbjct 114876 CTCGTATACACATTCGAAGTGTATGGCTCAAAACATTCATTATTACCCAAAATTTGACTG 114935 Query 47412 GTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATC 47471 || ||||| || ||||| | ||||| | ||| ||||| | ||||||||||| | || Sbjct 114936 GTGGATGCAGTTGGCATTGGAGCAACAAGTAAACTATTACGAACTCCATATTTGAGAATT 114995 Query 47472 TNNNNNNNNNNNNGTTTCCAATCCCA-------------AAGATCTG--------ATGGA 47510 | || ||||||||| | ||||| | || Sbjct 114996 TCTTGTCTCAAACCTTCCCAATCCCATCTTCCACTCGTGATGATCTTTCCTTCAAAAGGT 115055 Query 47511 ACAACATTC------CAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTA 47564 || | ||| ||||| |||| ||| | ||||||| |||| || ||| || | | Sbjct 115056 TCACCTTTCATGGTCCAAAATTCATGTTGGAAAATTCCTCTACTCATTGGACTTCCTTGA 115115 Query 47565 TATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAA 47624 || || | |||||| || | | || || | ||||||||| ||| ||||||| | || Sbjct 115116 TAGGTCTCATAAGGTCCTTCTGTCTTGGCAACTTCACAACTGGCTGTCAATGCAGCAAAA 115175 Query 47625 TATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATAN 47684 ||||||||||| || |||| | || | | || | |||||| || || ||| Sbjct 115176 TATATTGTTTCGAAAATTTCTCGATTCAAAATCTTGGCTTCTTCACTCTCGAAGGGAAGA 115235 Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTT 47744 || | ||| |||||||| |||||||| | |||||| || | ||| | Sbjct 115236 TGCATCTTGATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGACGATGTCTC 115295 Query 47745 TTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA 47804 ||||| |||||| | |||||| | || | || || || || || | | Sbjct 115296 ATATTACTCTTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATCTTGTTCAAA 115355 Query 47805 NNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA----CTTGTTATT 47860 |||||||| |||| | | ||| | | ||| | Sbjct 115356 TTCTTGGTGGCAATTTTGACAATTTCAAACAATTGTTCATGATCGTAGGTACGTGTCGTC 115415 Query 47861 TA--TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGA 47918 | | ||| || | |||||| ||| ||| | ||||| |||||||| |||| |||| Sbjct 115416 TCATTGACATACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGCTACTTCATCTGGA 115475 Query 47919 TTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGA 47978 || |||| || ||||||| ||| | || ||||||| || || | |||||| Sbjct 115476 GCTGTGTATTCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGTTCCAAGATTTTGT 115535 Query 47979 TGATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTA 48036 ||||| ||| | |||||||| ||||| |||||||| |||| ||||| || | Sbjct 115536 TGATTTGATTTTC--TATTACATGCATCCTTATAAAGCATGTAAGGAACACCAGTCTCAA 115593 Query 48037 TCTGAGATTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCTTTA 48095 | || | ||||| || | ||||| || | ||| | ||| | || | Sbjct 115594 TTTGTGCCTCAATAATTGCAAACCAAAGC-TCTTGAGCACGAACGACACGGCGTGCACGA 115652 Query 48096 TTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAAC 48155 || | || || ||| || | | ||| || || || |||||| | | | Sbjct 115653 CCCTCCTTCTCATAACGCAAATACAATTCATTAAACTCTTCACCCCACACATCAGCAAGT 115712 Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 |||||| |||||||||||| | | |||||||| ||| | || ||||| |||| Sbjct 115713 CCAGGAGCTTCATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCACTCTCTCCATA 115772 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||| | ||| | | | | ||| ||||| | || || | ||| || || ||| Sbjct 115773 AACAAATCATTCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTTCCTCCTTTCCA 115832 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 ||||| || | | || | ||| || | ||||| | |||||| || || ||||| | Sbjct 115833 GTATTCTTTCTCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTCCAAATAAACG 115892 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | | ||| ||||||| ||| |||||||| | || | |||||| | ||| | Sbjct 115893 GCAAAGGCTCCTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAGTGTCGTTGAAT 115952 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || | | ||| || | | ||||| || | || |||||||| ||| || |||| Sbjct 115953 ACACGAAGCATGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAATGTAGGATCCA 116012 Query 48456 CTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCA 48515 || | || ||| || || | || |||||||| || | || ||||| | ||| Sbjct 116013 GAGGCACGAATGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGATATCAAGGCA 116072 Query 48516 CACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAA 48575 ||| || || ||||| ||||| ||| || ||| ||| |||| | || || Sbjct 116073 CACGTCTTGAGTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATGGCCACTAAGAAG 116132 Query 48576 CAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATA 48635 ||| | |||||| ||| ||| || | ||| || | || ||||| || || || Sbjct 116133 CAAGAACTCATTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAGAGGCGTGGATG 116192 Query 48636 AACCATTTCTCTGATAA-CAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATG 48694 || ||| | || ||| |||| || ||||||||| | || ||||| | ||| Sbjct 116193 AA-CATACCAGTGCTAAGTAATTCGTAGGTTTCAATAGCCTTCTCAATATCGGAACCATG 116251 Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 || || | | |||||||| ||||| | |||||||| ||| |||| Sbjct 116252 AATGCCCAAACTCACACGCATGAACATGTGTTGAGGTCGTTCGGCAAT 116299 >seq93 Length=103736 Score = 188 bits (208), Expect = 8e-43 Identities = 610/923 (66%), Gaps = 37/923 (4%) Strand=Plus/Plus Query 18671 TTTG-ATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||| |||||| ||||||| || |||||||| || || || || | ||| || ||| Sbjct 84573 TTTGCATATTCACCAACTCTCTTCTCAAAGAAGTTCGTCTTACCAGACACTGAAAT-CAT 84631 Query 18730 -TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 | ||| |||| |||||||||| ||| || | || | |||||| | || Sbjct 84632 ATTCATCCAATCGAATGGATTTTGGACAAGGTAAACCTTATCATATCCTATCGAGACAAG 84691 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTT-CATCATATCACAATTCATTCCTATTA 18847 || || ||| || ||||||| ||| ||| |||| ||| | | | ||||||| || || | Sbjct 84692 TAATCGATCAGCAACAAATTCAATGTAT-TGTTGCATGAGACGAGAATTCATACCAATCA 84750 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC--TGATAT 18905 | | ||||| || | ||| || ||||| | || || | || || || ||| Sbjct 84751 AGTCCACAGGGAGAGATTCTCGAATGAATTCCTTCTCAATCTCAACAGCTTCACTGACC- 84809 Query 18906 AATAGAT--ACAACTCTATCTTCATTAGGAG----GGTATA---GAAGATGTTTAAACAT 18956 ||| || ||||| ||| | ||| |||||| || ||| | ||| Sbjct 84810 AATGAATGTACAAC-----CTTT-TGAGGCAATTTGGTATATTTGAGCATGGA-ATACAA 84862 Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 | ||| ||||| || |||| ||| || |||| | ||||||||||| || || || Sbjct 84863 GAGACAAGCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGT 84922 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 || |||||||||| ||||| || || | ||| || || ||| || |||||| ||| Sbjct 84923 CAATCCAGGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAA 84982 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 ||| |||||||| || ||||| |||| | || ||| || ||| || | || Sbjct 84983 GAAGATACCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCA-AACAAG--TTATCCGA 85039 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 | |||||||||| |||||| ||||||||||| || |||| | || || || | Sbjct 85040 GTTGATCCATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGGC 85099 Query 19197 ATTAAATAGATACATACGCTCATCT-GTATCTTTAACATATGCATCTATCAATAAACTG- 19254 ||| || ||| || | ||| || || |||| || | || || | | || Sbjct 85100 ATTGAAGAGA-CGATGTCTTTCTCTCGTGTCCTTAATGTAGGTTTCAATTA--GAGTTGA 85156 Query 19255 -TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 ||||| |||| ||||||||| || || || || || ||||| || |||||||| ||||| Sbjct 85157 ATACATCTCTGCATGAATATTCTCAATGGCAATTTGGAATCCATAGAAACATCTGGCTTC 85216 Query 19314 TGTTATCTGTACTTCA-CTACAAAATCTTTCGAC-CAAATTTTCATTAACTATTCCATCA 19371 | || || |||||| | | ||| | || ||| ||| || ||||| || || ||||| Sbjct 85217 AGGAATTTGAACTTCAGCCATAAATTGTT--GACACAAGTTCTCATTCACAATACCATCG 85274 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA 19431 || ||||| || || || ||| || || || |||| ||||| | | | || Sbjct 85275 GAGGCAGCAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTGTTCATTGGTATTGAGAGTT 85334 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 | ||| | | ||||||| | | ||| ||||||||| | ||||| ||||| ||| Sbjct 85335 TCCCATTGAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCAGAAAGATGCCATG 85394 Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 || || || ||||| | ||| | | ||| || || || || | ||| || | || | Sbjct 85395 GCCTTCTTGTACATCTCCCAAACCTTTTGATGTTCGATTGGGAAGAGAACGAAACGATGT 85454 Query 19552 TTATTTTCTTTAAGAATAGGTTC 19574 |||||| || || | |||||| Sbjct 85455 GGATTTTCCTTGAGGACAGGTTC 85477 >seq40 Length=471424 Score = 123 bits (136), Expect = 3e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 65854 GTAATAGGAATAGATGAAGGCCAATTCTTTCAAGATATTGTAGAGTTTTGTGAAAATATG 65913 || || ||||| |||||||| |||||||||| ||| | || || ||||||||| Sbjct 411274 GTCATTGGAATTGATGAAGGTCAATTCTTTCCTGATTTAGTTGACTTTTGTGAAGCAGCT 411333 Query 65914 GCAAATAAAGGAAAAATAGTGATAGTTGCAGCATTGGATGGAACATTTAAAAGAAAACCT 65973 |||||| ||| ||||| ||||| || || ||||||||||| || ||||||||||| Sbjct 411334 GCAAATGGAGGTAAAATTGTGATTGTGAGCGCCTTGGATGGAACTTTCCAAAGAAAACCT 411393 Query 65974 TTTGGTAATGTATTAAATTTAATTCCATTATCTGAAACAGTAACAAAACTTACAGCTGTG 66033 |||||| | || || ||| |||||| | |||||| || ||| | | ||||| Sbjct 411394 TTTGGTGACGTCTTGCGTTTGATTCCAATGGCTGAAAGTGTTGTGAAATTGAAGGCTGTT 411453 Query 66034 TGTATGAAATGTTTTAAAGATGCATCTTTTTCAAAACGTAT 66074 || ||| || | |||||||| ||||| | |||||||| Sbjct 411454 TGCATGGTTTGCTGCAAAGATGCTGCTTTTACTAAACGTAT 411494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104766869360