Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_016562.1 Length=132662 Score E Sequences producing significant alignments: (Bits) Value seq558 109 5e-19 >seq558 Length=819 Score = 109 bits (120), Expect = 5e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 39875 TATTCAAAATCTCCACCACCTTGCCATTGTACTTCTTTACTAATACCACCTTGCTCACCT 39934 ||| ||||| |||||||||||||| | || || | || ||| ||||||||||| Sbjct 390 TATACAAAAGAACCACCACCTTGCCAATCTAAATCAGTTGAAACACCGCCTTGCTCACCC 449 Query 39935 TCTATAACTTTTTTAAGTCTTTCTTTTGTGATAGTTTCTATATAATCCATTTGTTCTATA 39994 || |||||||||| | ||| | | | ||| | || || ||||||||||| | | Sbjct 450 TCAATAACTTTTTGTAACCTTGGGATAGATACAGTATTAATGTAGTCCATTTGTTCAACA 509 Query 39995 CCTATCCATTTGCGTTTCATTTTATGTGCTACTGCTAAAGTAGTGCCACTTCCTGCAAAA 40054 || || ||| || ||||||||||||||||| ||| ||||||| || || ||| Sbjct 510 CCAATATATTGACGATTCATTTTATGTGCTACCGCTTGAGTAGTGGCAGAACCCATAAAG 569 Query 40055 AAGTCCATTACAAGATCATTTTCATTTGTAGAAAGATCCAATATTATTTTTAATAAG-TA 40113 || || | ||||| |||||||| | || || ||| | || | ||||||| || | Sbjct 570 AAATCTAATACAATATCATTTTGTGAAGAAGTAATATCTACTA-AACTTTTAATTAGTTT 628 Query 40114 TTCAGGTTT 40122 |||||| || Sbjct 629 TTCAGGCTT 637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424390631101522