Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq93 159 4e-34 seq40 114 2e-20 >seq93 Length=103736 Score = 159 bits (176), Expect = 4e-34 Identities = 391/590 (66%), Gaps = 17/590 (3%) Strand=Plus/Plus Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 |||| | ||| ||||| || ||||| |||||||||| | ||||||||||| || | Sbjct 84859 ACAAGAGACAAGCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGA 84918 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAG 37287 |||| ||||| ||||| |||||||| || || |||||||| || | ||||||||| Sbjct 84919 AGGTCAATCCAGGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCAC 84978 Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGA--AAGTTGAACT 37345 |||||| |||||||| || ||||| || | | ||| | | | ||||| Sbjct 84979 TAAAGAAGATACCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAACAAGTT----- 85033 Query 37346 ATAATCAGA---AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 ||| || |||||||| | |||| ||||| || ||| || || || Sbjct 85034 ---ATCCGAGTTGATCCATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGT 85090 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 ||||| || || |||||| | | ||||| | || | || || || |||||||| Sbjct 85091 ATCAATGGCATTGAAGAGACGATGTCTTTCTCTCGTGTCCTTAATGTAGGTTTCAATTAG 85150 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 |||||| || | |||||||| ||||| || || || || ||||| ||||| || Sbjct 85151 AGTTGAATACATCTCTGCATGAATATTCTCAATGGCAATTTGGAATCCATAGAAACATCT 85210 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||||||| | |||||| || | ||| | | ||||| ||||| || || || Sbjct 85211 GGCTTCAGGAATTTGAACTTCAGCCATAAATTGTTGACACAAGTTCTCATTCACAATACC 85270 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT--CATTTGAT 37640 ||| || |||||||| || | |||| || || || ||| ||||| |||| Sbjct 85271 ATCGGAGGCAGCAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTGTTCATTGGTATTGAG 85330 Query 37641 AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTT 37700 | ||| ||| | | ||||||| | | ||| ||||| ||| | ||||| ||| | Sbjct 85331 A--GTTTCCCATTGAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCAGAAAGAT 85388 Query 37701 GCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAA 37750 |||| || || |||||| ||||| | | ||||| ||||| || Sbjct 85389 GCCATGGCCTTCTTGTACATCTCCCAAACCTTTTGATGTTCGATTGGGAA 85438 >seq40 Length=471424 Score = 114 bits (126), Expect = 2e-20 Identities = 195/280 (70%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 78230 TGATGTTATTGGAATTGATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAA 78289 |||||| ||||||||||||||||||||||| ||| |||| |||| || |||| |||| Sbjct 411270 TGATGTCATTGGAATTGATGAAGGTCAATTCTTTCCTGATTTAGTTGACTTTTGTGAAGC 411329 Query 78290 TATGGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAA 78349 |||||| ||| |||||||| ||||| || || |||| || | |||||||| Sbjct 411330 AGCTGCAAATGGAGGTAAAATTGTGATTGTGAGCGCCTTGGATGGAACTTTCCAAAGAAA 411389 Query 78350 AACATTTGGTAATATTCTAAATTTAATTCCATTATCTGAAAAGGTAATAAAATTAAATGC 78409 | | |||||| | | | ||| |||||| | |||||| || | ||||| || || Sbjct 411390 ACCTTTTGGTGACGTCTTGCGTTTGATTCCAATGGCTGAAAGTGTTGTGAAATTGAAGGC 411449 Query 78410 TATATGTAAAATATGTTTTAATGATGCTGCATTTACAAAAAGATTATGTGACGATACTA- 78468 | | || | | || | || |||||||| ||||| ||| | | || || || | Sbjct 411450 TGTTTGCATGGTTTGCTGCAAAGATGCTGCTTTTACTAAACGTATCACCGATGA-ACAAC 411508 Query 78469 AAATTGAACTAATTGGTGGAGAGGATAAATATAGTTCTGT 78508 ||| ||| | |||||||| | || || |||| | |||| Sbjct 411509 AAACGGAAGTGATTGGTGGTGCTGACAAGTATATTGCTGT 411548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592312550126960