Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq29 154 1e-32 seq42 152 4e-32 seq120 132 4e-26 seq82 131 1e-25 seq151 127 2e-24 seq38 116 3e-21 seq76 109 4e-19 >seq29 Length=427163 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 || || |||||||| | | ||| | ||||| || ||||| ||||| || ||||||||| Sbjct 49278 TTACCACCTCTTAATCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCG 49219 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | |||||| |||| |||||||||||||| || || |||||||| |||||||| || Sbjct 49218 GAAAGGGTTCTGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGT 49159 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 ||||| || || ||||||||||| ||| || || | || | ||||| | ||| Sbjct 49158 GGAATCCCCTCCTTATCTTGAATCTTTGACTTGACGTTCTCGATTGTGTCGTTAGATTCA 49099 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||||| || || || || |||||||| || || || ||||| Sbjct 49098 ACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 49049 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || ||||| ||||| || ||||| |||| | ||||| |||| || |||||| Sbjct 48757 TGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCCATCTTCTAATTGC 48698 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | |||||||| || ||||| ||||| || ||||| || || Sbjct 48697 TTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTTG 48638 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || | || | ||||| | ||| ||||||||||||| || ||||| ||| Sbjct 48637 CTTTTCACGTTCTCGATTGTGTCGTTGGATTCGACTTCAAGAGTGATAGTCTTGCCAGTT 48578 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 ||||| || || || || |||||| Sbjct 48577 AAAGTCTTGACGAAGATTTGCATG 48554 >seq42 Length=292872 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || || | ||||| | ||||| ||||| |||||||| || |||||||||| | Sbjct 166394 CCTCCCCTCAATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAG 166335 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| |||||||||||||| || || ||||| | ||||| || || ||| Sbjct 166334 AGGGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGA 166275 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| |||||||| || ||| || ||| | || | || ||| | ||| ||| Sbjct 166274 ATGCCTTCCTTATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACT 166215 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || ||||| || |||||||| ||||| || ||||| Sbjct 166214 TCCAATGTAATGGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 166168 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || | | ||| | || | || ||||| ||||| || ||||| |||| Sbjct 166168 TTCCTCCTCTCAATCTAAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCGG 166109 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || |||||| | || |||||||| ||||| ||||| |||||||| |||||||| || | Sbjct 166108 AGAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 166049 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| ||||||||||| || || || |||| | ||||| | ||| | Sbjct 166048 GAATACCTTCCTTATCTTGAATCTTGCTCTTCACGTTTTCGATGGTGTCGTTGGATTCAA 165989 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||| | || || || || | || || || || || ||||| Sbjct 165988 CTTCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165940 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| || || | || ||||||||||| || |||||||| | | ||||| | || Sbjct 165923 AAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTTCCGTCT 165864 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || |||||||| || ||||| || | | ||||| || || ||||| ||||| || ||| Sbjct 165863 TCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCT 165804 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || ||| ||| || |||| | || ||| | || || |||||||| | || Sbjct 165803 TGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAACCTCAAGAGTAATGGTC 165744 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || ||||| || || || ||||| Sbjct 165743 TTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 >seq120 Length=320511 Score = 132 bits (146), Expect = 4e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | ||| || ||||||||||||| || ||||| | ||||| || | Sbjct 60815 TTCCACCTCTCAATCTTAAGACCAAATGAAGGGTAGCATCCTTTTGAACGTTGTAGTCAG 60874 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || ||||| |||| ||||||||||| |||||| | ||||||||||||||||| | | Sbjct 60875 AGAGTGTTCTTCCATCCTCCAATTGCTTGCCTGCATAGATCAAACGCTGTTGATCAGCTG 60934 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| |||||| ||||| || ||| | || | | |||| | || | Sbjct 60935 GAATTCCTTCCTTATCTGTGATTTTGCTCTTCACATTCTCAATCGAGTCATTAGACTCAA 60994 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 | || | |||| ||| | || || | ||||| ||||||| |||||| || Sbjct 60995 CCTCCAATGTGATAGTTCTACCAGTGAGTGTTTTGACAAATAGTTGCATGTTT 61047 >seq82 Length=211372 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | || || || || | |||||||| ||||| || ||||| || | Sbjct 147706 CCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGAC 147765 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| ||||||||||| || ||||| ||||| | |||||||| || ||| Sbjct 147766 AAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 147825 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||||||| ||| || ||| | || | ||||| | ||| || Sbjct 147826 ATACCTTCCTTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGACC 147885 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || | ||||| || || ||||| || || || || || || ||||| || Sbjct 147886 TCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATTGT 147935 >seq151 Length=76492 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | || | || ||||| || | || ||||||| ||| ||||| | Sbjct 51035 CCACCTCTTAATCTCAACATCAAGTGAAGAGTTGCATCCTTTTGTACATTATAATCCGAT 50976 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| |||||||||||||| ||| | ||||||||||||||||| | ||| Sbjct 50975 AAAGTTCTTCCATCCTCCAATTGCTTACCAGCATAAATCAAACGCTGTTGATCCGCTGGA 50916 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||| | ||| ||||| ||| | || | | |||| | || || Sbjct 50915 ATACCTTCCTTATCTGTGACTTTCTGTTTAACATTCTCAATTGAGTCATTGGACTCAACA 50856 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | |||| |||| | || || | || || ||||||| |||||| Sbjct 50855 TCCAATGTGATCGTTCTACCTGTAAGTGTCTTGACAAATAATTGCATG 50808 >seq38 Length=237352 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || || ||||| |||| || ||||||| ||||||||| | | |||||| |||| Sbjct 109308 AACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCGATAAAGTTCTTCCATCC 109367 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || ||||| || || ||| | |||||||| |||||||| | ||||||||||| |||||| Sbjct 109368 TCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGGAATGCCTTCCTTATCT 109427 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| ||||| ||| | || | | |||| | || || || | |||| ||| Sbjct 109428 GTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGACTCAACATCCAATGTGATTGTT 109487 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || | ||||| || |||| ||||| Sbjct 109488 CTACCTGTAAGTGTTTTAACGAATAATTGCAT 109519 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | | ||||| || || || || || || ||||| || ||||| ||| Sbjct 109063 TTCCACCTCTGAGTCTCAAAACCAAGTGTAGAGTGGAATCCTTTTGAATGTTGTAGTCGC 109122 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| |||| |||||||||||||| ||||| || | | |||||||| | | Sbjct 109123 TCAAAGTTCTTCCATCCTCCAATTGCTTACCAGCAAAGATAATTCTTTGTTGATCCGAAG 109182 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || || || || ||| || |||||| | || | ||||||| | | || Sbjct 109183 GAATACCATCCTTTTCAAAAATCTTACTCTTTACACTCTCAATAGTGTCATTCATCTCTG 109242 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | ||||| ||||| || ||||||||| | ||||| | ||||| Sbjct 109243 CCTCCAAAGTGATTGTTTTTCCAGTTAAAGTTCTCACAAAGAGTTGCAT 109291 >seq76 Length=223365 Score = 109 bits (120), Expect = 4e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 || || ||||| || | || || || || || || ||||| ||||| || ||||| || Sbjct 84285 TTACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCA 84344 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | |||||| |||| |||||||||||||| ||||| ||||| | |||||||| || Sbjct 84345 GACAATGTTCTGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGA 84404 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTC 101409 ||||| ||||| || ||||| || ||| || ||| | || | ||||| Sbjct 84405 GGAATACCTTCCTTGTCTTGGATCTTTGACTTCACATTCTCGATGGTGTC 84454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396275627784918