Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq42 89.7 4e-13 >seq42 Length=292872 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | ||| ||||| || | || ||||||||||| ||||||||||| Sbjct 165938 CCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGAC 165879 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | ||| |||| || || ||||| |||||||| || |||| ||||| || | ||| Sbjct 165878 AAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGA 165819 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| ||| || | | | || | ||| ||| Sbjct 165818 ATTCCTTCCTTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAACC 165759 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || ||||| ||||| ||||| || || || ||||| Sbjct 165758 TCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934935103402