Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq148 100 7e-16 seq19 96.9 8e-15 >seq148 Length=210923 Score = 100 bits (110), Expect = 7e-16 Identities = 290/437 (66%), Gaps = 16/437 (4%) Strand=Plus/Plus Query 150359 ATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTT 150418 |||||| | | || ||| |||| || || ||| | | | ||||| ||| |||||| Sbjct 81714 ATTCAGGTGTTGTCACGTCAAACAAAGAACAATCCAGTGATCATTGGTTTACCTGGTGTT 81773 Query 150419 GGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGAT 150478 ||||| ||| ||||||| ||| |||| ||| | || | || || || ||||||||| Sbjct 81774 GGTAAGACAGCCGTCGTTGAAGGACTAGCTCAAAGAATTGTGAAAGGAGAAGTTCCAGAT 81833 Query 150479 TCTATGAAAGATGTTGAAATTCTTT--CTTTGAATATGGGTGCATTTACTGCTGGTACTA 150536 || || |||| || ||| || |||| | ||| ||| ||| ||||||| | | Sbjct 81834 TCCAT-TAAGAAAAAGAGATTGATTGCACTTGACT-TGGCAGCAGTTATTGCTGGTTCAA 81891 Query 150537 AGTATCGTGGTGAATTCGAAGAACGTGT--AGACAATTTGCTACAAGAACTAAAAGAACG 150594 | | | | ||||||||||||||| | || | | ||| || |||| | |||| Sbjct 81892 AATTTAGAGGTGAATTCGAAGAAAGAGTTCAAGCCATT--CTCAAAGACATTCGAGAATA 81949 Query 150595 CGA---TGATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGAC 150651 || ||| ||||| | || || |||||||| || | ||| || |||||| | Sbjct 81950 TGAAGGTGAAATTATTTTATTTATTGATGAAATTCACATGATTGTGAATGCTGG---AAA 82006 Query 150652 TGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAAT 150711 || ||||| |||| || || ||||||||||||||||| | | || || | Sbjct 82007 TGCACAAGGTTCAGTGGACTTGTCGAACATGTTAAAACCTGCTCTTGCAAGAGGAGAGTT 82066 Query 150712 TC-GTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAG 150770 | ||| || ||||| || || | |||||||| | || ||||||||||| | Sbjct 82067 GCACTGT-ATTGGTGCTACCACTTTGGATGAATACAGAGTTCATATTGAAAAAGACAAGG 82125 Query 150771 CACTACAGCGTCGTTTC 150787 |||| ||||||||| Sbjct 82126 CACTCGCTCGTCGTTTC 82142 >seq19 Length=149815 Score = 96.9 bits (106), Expect = 8e-15 Identities = 260/390 (67%), Gaps = 12/390 (3%) Strand=Plus/Plus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGAT-GATCTAATTCAGA 150365 |||||||||| | |||||| | |||| | || | ||| ||| || | | ||| | Sbjct 68978 AGAAGGTAAATTAGATCCAGTGGTTGGAAGAGACAAGGAAATTGCCAGAACCA-TTCGAA 69036 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAA 150425 |||| || | | ||| ||||| || | ||| ||||| || ||||||||||||| Sbjct 69037 TTCTATCAAGAAGAACTAAAAACAACCCAGTTTTACTTGGTCCTCCTGGTGTTGGTAAAA 69096 Query 150426 CACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGA 150485 | |||||| || || | || | || ||||| || || ||||| | | ||| Sbjct 69097 CCGCAATCGTCGAAGGTATCGCCATGAGAATTGCTAAAGGAGACATTCCACAGAATTTGA 69156 Query 150486 AAGATGTTGAAATTCTTT--CTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCG 150543 || ||| ||||| ||| | |||| | | | ||| | | ||| | || ||| | Sbjct 69157 AA--TGT--AAATTATTTGCCATTGATTTAGCTTCCATG-ATTAGTGGCAGCAAATATAG 69211 Query 150544 TGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAA---CGCGATGA 150600 |||||||| |||||||| || | | | | ||||| || ||||| | | |||| Sbjct 69212 AGGTGAATTGGAAGAACGAGTCAAAGCTCTCTTGAAAGAAGTAGAAGAAAATCACAATGA 69271 Query 150601 TGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGG 150660 ||||||||||||| |||||||| || || ||| | || |||||||| ||||| | || Sbjct 69272 CATTATTCTGTTCATTGATGAAATTCACACCATTGTAGGAGCTGGTGCCACTGGTGAAGG 69331 Query 150661 TTCTTTGGATATGAGCAATATGTTAAAACC 150690 | |||| || ||| ||| | ||||| Sbjct 69332 AAGTATGGACATTGCCAACATGATCAAACC 69361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147581960189852