Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq93 109 1e-18 seq36 84.2 4e-11 >seq93 Length=103736 Score = 109 bits (120), Expect = 1e-18 Identities = 341/515 (66%), Gaps = 15/515 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAAC-TCAAACTGGACCGCCGAAGAGATTGATCTGGC 25538 |||||||||||||||||||| || | || |||||| || ||||| | ||||| Sbjct 85414 TGGGAGATGTACAAGAAGGC-CATGGCATCTTTCTGGACTGCTGAAGAAGTGGATCTCCA 85356 Query 25539 CAAGGACATGGACGGCTGG--TACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 || || || | ||| || ||| || | | | || || || || ||||| Sbjct 85355 CACAGATATTGCTCAATGGGAAACTCTCAATACCA--ATGAACAACACTTCATCAAGACT 85298 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || ||||| |||||||| ||||| |||||||| ||||| ||||| |||| | ||| Sbjct 85297 GTTTTGGCCTTCTTTGCTGCCTCCGATGGTATTGTGAATGAGAACTTGTGTCAACAATTT 85238 Query 25657 ACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | ||||| | | | | | || |||| |||||||| || ||||| || ||||| || Sbjct 85237 ATGGCTGAAGTTCAAATTCCT-GAAGCCAGATGTTTCTATGGATTCCAAATTGCCATTGA 85179 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 ||| | || | ||| ||||| | | || | || ||||||| ||| || Sbjct 85178 GAATATTCATGCAGAGATGTATTCAACTCTAATTGAAACCTACATTAAGGACACGAGAGA 85119 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGC--ATCAAGAGGAAGGCGCGG 25833 ||| |||| || || |||||| || || ||| | |||| | |||||| || Sbjct 85118 AAGACATCGTCTCTTCAATGCCATTGA-TACTGTTCCATCCGTTCAA-AAGAAGGCTCGT 85061 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| |||| ||||||||| | || || ||||| || || || | |||||| Sbjct 85060 TGGGCTTTGAAATGGATCAAC--TCGGATAACT-TGTTTGCTGAACGATTGATTGCCTTT 85004 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 ||| |||||| || ||||| || || || || || ||||||| ||| | ||| || Sbjct 85003 GCTTGTGTGGAAGGTATCTTCTTTAGTGGATCTTTCTGTTCCATCTTTTGGATGAAGAAG 84944 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 | || ||||| || || ||| ||||| || Sbjct 84943 AGAGGTTTGATGCCTGGATTGACCTTCTCCAATGA 84909 >seq36 Length=122865 Score = 84.2 bits (92), Expect = 4e-11 Identities = 173/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 222107 TTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCC 222166 || || |||| ||| ||||| |||||||| || | ||||| ||||||| ||| ||||| Sbjct 115836 TTCTTTCTCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTCCAAATAAACGGCA 115895 Query 222167 AGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGAT 222225 | || || ||| || ||||| |||||||| | | || | ||||||| | Sbjct 115896 AAGGCTCCTTTTCGTTTACCACCACCTTGATCCACGTAACGGGC-AGTGTCGTTGAATAC 115954 Query 222226 GCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCC 222285 ||||| | || | ||||| ||||| |||||||| || |||||| | || Sbjct 115955 ACGAAGCATGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAATGTAGGATCCAGA 116014 Query 222286 GGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCA 222345 ||| | | |||| | |||| |||||||||||| || || || |||| ||| || Sbjct 116015 GGCACGAATGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGATATCAAGGCACA 116074 Query 222346 GCTCTTGAGAGTGTC 222360 ||||||| || || Sbjct 116075 CGTCTTGAGTGTATC 116089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838135538560