Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq82 100 2e-16 seq42 100 2e-16 seq38 87.8 2e-12 seq29 86.0 5e-12 seq76 84.2 2e-11 >seq82 Length=211372 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || || || || || ||||| ||||| || || ||| | Sbjct 147933 AATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAA 147874 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| ||| || ||||| || || | || |||||| Sbjct 147873 CGACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 147814 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | |||||||| || || |||||||||||| | ||| || | || || || Sbjct 147813 ACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAA 147754 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||| |||||||| ||||| |||| || ||||| ||||||| Sbjct 147753 CATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGG 147706 >seq42 Length=292872 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| || || || || |||||||| ||| ||| | Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| ||| ||| || || || || | || ||| || Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || || || || || |||||||||||| | ||| | ||||||| || Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||||||| |||||||| ||| | || || ||||| | ||||| Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGG 166394 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| || ||| | || ||| ||||| ||||| |||||||| || || ||||| ||| Sbjct 165805 GACAAGGAAGGAATTCCACCAGACCAACAAAGACTCATCTTTGCCGGAAAGCAATTAGAA 165864 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 || | ||| || | ||||| ||||||||||||||||| || ||||| |||| || Sbjct 165865 GACGGAAGAACCTTGTCTGATTACAACATTCAAAAAGAATCAACATTGCACTTGGTTTTG 165924 Query 28767 AGATTACGAGGAGGGAT 28783 ||| | |||| || || Sbjct 165925 AGACTCAGAGGTGGTAT 165941 >seq38 Length=237352 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||| ||| |||||||||| || || |||||||| ||| | |||| || ||| Sbjct 109177 GATCAACAAAGAATTATCTTTGCTGGTAAGCAATTGGAGGATGGAAGAACTTTGAGCGAC 109118 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| || || ||||| ||| |||| || ||| | |||| || || Sbjct 109117 TACAACATTCAAAAGGATTCCACTCTACACTTGGTTTTGAGACTCAGAGGTGGAAT 109062 >seq29 Length=427163 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| || ||| | || |||||||| ||||| |||||||| || || ||||| ||| Sbjct 48648 GACAAGGAAGGAATTCCACCTGATCAACAAAGACTCATCTTTGCCGGAAAGCAATTAGAA 48707 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| || |||| || ||||||||||| ||||| ||||| ||| | || | Sbjct 48708 GATGGAAGAACCTTGTCCGACTACAACATTCAAAAGGAATCCACTCTCCACCTTGTCCTC 48767 Query 28767 AGATTACGAGGAGGGAT 28783 ||| | |||| || || Sbjct 48768 AGACTCAGAGGTGGTAT 48784 >seq76 Length=223365 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||||||||| ||| | || ||||| || || |||||||| ||| | ||| || | || Sbjct 84401 AGATCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGATGGCAGAACATTGTCTGA 84342 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||||||||||| ||||| ||||| ||| |||| || ||||| |||| || Sbjct 84341 CTACAACATTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 84288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425401824027546