Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq133 178 1e-39 >seq133 Length=156489 Score = 178 bits (196), Expect = 1e-39 Identities = 500/751 (67%), Gaps = 14/751 (2%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||| ||| ||||| || || ||||| ||||| || ||||||||| |||||||| || Sbjct 125441 ACACAAATTGGACCAACACCTGGACCACCACCACCGTGTGGAATAGCAAATGTCTTGTGA 125500 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| || |||||||| || |||||| | | ||| || ||||| || || ||| Sbjct 125501 AGATTAAGGTGACATACGTCAGCACCAATCTTTCCAGGTGATGTGAGACCAACTTGAGCA 125560 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | ||| || ||| ||||| |||||||| | ||| || Sbjct 125561 TTCATGTTGGCTCCATCCAAATAAACTTGAGCACCAGCTTCATGAACCAAGCGACAAATT 125620 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCAT-AATACA-TG 138420 | | || | ||| | |||||||| ||||||||||| |||||||| ||| || Sbjct 125621 TCTTGAATACTCTCTTCGTAGACACCATGTGTCGATGGATAAGTAATCATCAATGCAGCA 125680 Query 138421 AGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCAT 138480 | | | ||| |||| | || ||| || | || |||| || | || |||| Sbjct 125681 ACATTGTCCTTGTTTTCA-GCAAGC-TTCACCTTCAAGTCATTGACATCAACATTACCAT 125738 Query 138481 CATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAG 138540 | |||||| | ||| | ||||||||||| || |||||| ||| || ||||| | Sbjct 125739 GCTTATCACATTCAACAACGACAACTTTCATACCGCACATGACAGCAGATGCTGGATTTG 125798 Query 138541 TTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCCT-TGA 138599 | || || || || |||| |||| |||||||| ||| | | || | || || | Sbjct 125799 TACCGTGAGCGGATGCTGGAATCAAACATACATGTCTGTGA-GATTGGCCAATACTCTCC 125857 Query 138600 TGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGTTGT 138659 ||| || |||||| || ||||| ||||| ||||| || || |||||||| Sbjct 125858 AAGTATTTCATAATGACTAACAAGCCAGCATATTCACCTTGTGAACCAGCATTAGGTTGC 125917 Query 138660 AATGATATAGAATCAAAACCTGTGATATCACATAACC-ATTTCTGTAAGTCATCTATTAT 138718 ||||| ||||||||| || | | || |||| | ||| || |||| || || Sbjct 125918 AATGAGCAGTCATCAAAACCAGTAACTTGACTCAACCAAACTCT-CAAATCATTAATCAT 125976 Query 138719 CTTTTGATAACCCATGGTCTGTATC-ATAGGTGTATGTGGATGCACGTTGGCAAATTCTT 138777 || |||| ||| | | || ||| | ||| | |||| || | || || ||| Sbjct 125977 TTTGAGATAGCCCTTAG-CTTGATCAAGAGGAACAAGTGGGTGAATTGAGGAGAACTCTG 126035 Query 138778 CCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTACCAAGTG 138837 ||||| || || |||| | | ||| ||||| | |||||| || ||| ||| | || Sbjct 126036 GCCATGTAACTGGAATCATTACACTTGCAGCATTCAATTTCATAGTACAAGAACCCAATG 126095 Query 138838 GAACCATACCATTTACTAATGAGA--AATCTTTAGAGCATAACTCATAGATATATCTCAT 138895 ||| |||||| | || | |||| | || |||| | | | |||||||||||| Sbjct 126096 GAATCATACC-GTGAC-AGAGAGAATAGTCCTTAGTTTCGAGTTTCTTGATATATCTCAT 126153 Query 138896 CATGTCAGTTTCACTGTGATACTTATTGAAT 138926 ||| || |||| |||||||||| || ||| Sbjct 126154 CATTGCATGTTCAGTGTGATACTTGTTAAAT 126184 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/188 (73%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 139835 TCTTGT-AGAATTATATGCTAACAGC-ATTGCCTCTGCTGCTGCAGTTGCTTCATCTAAT 139892 |||||| || ||||| | |||||| || || |||||||| ||||| ||||||| || Sbjct 127131 TCTTGTGAGCGTTATAA-CAAACAGCCATAGCTTCTGCTGCAGCAGTACCTTCATCCAAC 127189 Query 139893 AGAGATGCGTTTGCTATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAAT 139952 | || || || || ||||| | ||| || | || | || | ||||| || || | Sbjct 127190 AAGGAAGCATTCGCAATTGGAAGTCCAGTCAAATCGGAAATAACTGTTTGATAGTTAAGC 127249 Query 139953 AAAGCTTCCAATCTTCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAA 140012 || | ||| | |||||| ||||| |||||||||||||| |||||||| | || ||||| Sbjct 127250 AAGGATTCAAGTCTTCCTTGAGAAATCTCAGCTTGATATGGAGTGTATGGAGTATACCAG 127309 Query 140013 CTAGGATT 140020 | ||||| Sbjct 127310 CCTGGATT 127317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578994245686480