Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq36 230 3e-55 seq93 152 6e-32 seq139 87.8 2e-12 seq13 86.0 7e-12 >seq36 Length=122865 Score = 230 bits (254), Expect = 3e-55 Identities = 627/957 (66%), Gaps = 5/957 (1%) Strand=Plus/Minus Query 75299 GGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATG 75358 ||||||||||| ||||| | || || ||||||||||||||||| || | || || ||| Sbjct 116200 GGTATGTTCATCCACGCCTCTCCTACTCTCTTCAATGCTGGTACTCCCACTCCTCAAATG 116141 Query 75359 TCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTT 75418 ||||||| | | |||| || || || || || ||||| || | || || Sbjct 116140 AGTTCTTGCTTCTTAGTGGCCATGAAAGACGATTCCATTTCAGGTATTTACGATACACTC 116081 Query 75419 ACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTG 75478 | | |||||| || || ||| | ||||| ||||| || || | | ||| | | Sbjct 116080 AAGACGTGTGCCTTGATATCCAAGAGTGCTGGTGGTATCGGCTTGTCCGTTCATAACATT 116021 Query 75479 AGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATG 75538 | ||| | ||| ||||| || || || || || |||| | ||||| ||| Sbjct 116020 CGTGCCTCTGGATCCTACATTCGAGGAACCAACGGAACCTCCAATGGACTCATTCCCATG 115961 Query 75539 CTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGG 75595 ||||| ||||| |||| ||| || || || || |||||| || || || || || Sbjct 115960 CTTCGTGTATTCAACGACACTGCCCGTTACGTGGATCAAGGTGGTGGTAAACGAAAAGGA 115901 Query 75596 TCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGA 75655 || | || || || ||||| || |||||| ||||||| | || || | || || || Sbjct 115900 GCCTTTGCCGTTTATTTGGAGCCTTGGCATTCCGATATTTTTGATTTTTTAGATTTGAGA 115841 Query 75656 CTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCA 75715 || || | || || ||| | ||||| | |||| ||||| | Sbjct 115840 AAGAATACTGGAAAGGAGGAAATTCGAGCTCGAGATTTGTTTTTGGGTTTGTGGGTGAAT 115781 Query 75716 GACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAG 75775 || | || ||| || | || |||||| | ||| ||||| || || ||||| | | Sbjct 115780 GATTTGTTTATGGAGAGAGTGAAGGAGGATTCTCATTGGTCACTCTTTTGTCCTAATGAA 115721 Query 75776 GCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA 75835 || || || || | || | | |||||| |||||| | | | || ||||| Sbjct 115720 GCTCCTGGACTTGCTGATGTGTGGGGTGAAGAGTTTAATGAATTGTATTTGCGTTATGAG 115661 Query 75836 GAGGAGGGTAGAGCCAATGCGACT-GTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAA 75894 |||||||| | || | || | || | || || ||||| || ||| | | Sbjct 115660 AAGGAGGGTCGTGC-ACGCCGTGTCGTTCGTGCTCAAGAGCTTTGGTTTGCAATTATTGA 115602 Query 75895 ATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAG 75954 |||| | |||||||| || || |||||||| |||||||| ||||| | || Sbjct 115601 GGCACAAATTGAGACTGGTGTTCCTTACATGCTTTATAAGGATGCATGTAATAGAAAATC 115542 Query 75955 TAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTA 76014 || ||| | ||| | ||||| ||||| ||| || | || || |||||| | || || Sbjct 115541 AAATCAACAAAATCTTGGAACGATCAAATCCTCCAACTTGTGTACTGAAATTATTGAATA 115482 Query 76015 CACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT 76074 ||||| | ||||| ||||| || || |||||| || || |||||||||||||| Sbjct 115481 CACAGCTCCAGATGAAGTAGCTGTGTGTAACTTGGCAAGTATTGCACTTCCAAAGTATGT 115422 Query 76075 CAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTAC 76134 |||||| ||| || || | ||| ||||| || | |||||| || |||| || Sbjct 115421 CAATGAGACGACACGTACCTACGATCATGAACAATTGTTTGAAATTGTCAAAATTGCCAC 115362 Query 76135 CAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTC 76194 ||| ||| | ||| ||||||||| |||| |||||| |||||| || ||||| Sbjct 115361 CAAGAATTTGAACAAGATCATTGACAAGAATTATTATCCAGTTGAGGAAGCTAGAAAGAG 115302 Query 76195 TAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT 76251 ||||||| |||| | || ||||||||||||||||| || | || |||| ||||| Sbjct 115301 TAATATGAGACATCGTCCCATTGGTTTGGGTGTTCAGGGATTGGCCGATGCCTTTAT 115245 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 76491 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 76550 ||||||| ||| | | | || ||||||||||| || |||||| ||||| ||||||| Sbjct 114978 TTCGTAATAGTTTACTTGTTGCTCCAATGCCAACTGCATCCACCAGTCAAATTTTGGGTA 114919 Query 76551 ATAATGAATGCTTTGAACCATACAC 76575 |||||||||| ||||| |||||||| Sbjct 114918 ATAATGAATGTTTTGAGCCATACAC 114894 >seq93 Length=103736 Score = 152 bits (168), Expect = 6e-32 Identities = 351/520 (68%), Gaps = 13/520 (3%) Strand=Plus/Minus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCCTGAATGAA 64773 |||||||| |||||||| ||| | || |||| ||| | ||| | || || ||| Sbjct 85381 TGGACTGCTGAAGAAGTGGATCTCCACACAGATATTGCTCAATGGGAAACTCTCAATACC 85322 Query 64774 AATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTT 64833 |||||| | | ||||| ||| | |||| |||||||||| |||||||| ||||| Sbjct 85321 AATGAACAACACTTCATCAAGACTGTTTTGGCCTTCTTTGCTGCCTCCGATGGTATTGTG 85262 Query 64834 TTTGAGAATATCAAT-AACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCATT 64892 |||||| | | |||||||| || |||||| || || ||||| | | || Sbjct 85261 AATGAGAACTTGTGTCAACAATTTAT-GGCTGAAGTTCAAATTCCTGAAGCCAGATGTTT 85203 Query 64893 CTACGCATATCAA--TGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGATT 64950 ||| | || ||| |||||| ||| | |||||| || | ||||||| | ||| Sbjct 85202 CTATGGATTCCAAATTGCCAT--TGAGAATATTCATGCAGAGATGTATTCAACTCTAATT 85145 Query 64951 GACAAATACATTAAGGATGGATCTGA-AAAGAAGCAGTTATTTGAA-GCCATCCAAACTG 65008 || | ||||||||||| | || ||||| || || || ||||| | |||| Sbjct 85144 GAAACCTACATTAAGGAC--ACGAGAGAAAGACATCGTCTCTTCAATGCCATTGATACTG 85087 Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT 65068 | |||| || | |||||||| ||||| |||||||| | || | | | || Sbjct 85086 TTCCATCCGTTCAAAAGAAGGCTCGTTGGGCTTTGAAATGGATCAACTCGGA---TAACT 85030 Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 || || || || | |||| ||||| |||||||| ||||||||||| || || | Sbjct 85029 TGTTTGCTGAACGATTGATTGCCTTTGCTTGTGTGGAAGGTATCTTCTTTAGTGGATCTT 84970 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 |||| | || | |||| |||||||| | ||| | ||||| || | |||||| |||| Sbjct 84969 TCTGTTCCATCTTTTGGATGAAGAAGAGAGGTTTGATGCCTGGATTGACCTTCTCCAATG 84910 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || | ||||| |||||||| || | ||| ||| ||||| Sbjct 84909 AATTGATTTCTCGAGATGAAGGATTACACACGGACTTTGC 84870 >seq139 Length=139714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 176/261 (67%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 27779 CGCCAGTAGATCCAAATCCACCCGCACCTCTCTCTGTCTCTTCAAGAACACCAATTTCCT 27838 ||||||| ||||||||||| || || |||| || || || || | | || ||| ||| Sbjct 139529 CGCCAGTGGATCCAAATCCGCCTGCTCCTCGTTCCGTTTCATCCAAATCATCAACTTCTA 139470 Query 27839 GCACATCGGGTGTTTCACAGCGCTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTA 27898 | ||| || || |||||| |||| |||||| || || || ||| || | Sbjct 139469 CAATATCTGGCAAAGCAATTTGCTCAATCACAAATTGTGCAATTCGGTCTCCTCTCGCAA 139410 Query 27899 CCTCAAAGTCTTTGTCTCCGTGATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGG 27958 | |||||||| || || || ||||| | | ||| | | ||| |||| |||| Sbjct 139409 TTTTAAAGTCTTCATCACCATGGTTGAATAACAACACTCCCAAATTTCCTCTATAATCGG 139350 Query 27959 GATCAATAACACCCGCACCAACTTGAATACCATGCTTCACAGCGAGACCGGATCGTGGTG 28018 ||| | |||||| |||||||| | || || ||||||||| | || || ||||| | Sbjct 139349 AATCTACAACACCTGCACCAACATCTATGAAATTCTTCACAGCCAATCCCGAACGTGGAG 139290 Query 28019 CAACACGACCATACACACCAT 28039 |||| | ||||| ||||| Sbjct 139289 CAACTCTTCCATAATAACCAT 139269 >seq13 Length=365397 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 177619 TCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTG 177678 ||||| || | |||||||||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 115693 TCTTGCTGTAACATGAGCCACATGGCTTCAACATAATCCTTAGCATGACCCCAATCTCTT 115752 Query 177679 GCAGCGTTGAGGTTACC 177695 |||| | | |||||| Sbjct 115753 TCAGCATCCAAGTTACC 115769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565319613120