Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq42 150 3e-31 seq38 114 2e-20 seq151 113 7e-20 seq82 105 1e-17 seq29 105 1e-17 seq76 96.9 5e-15 >seq42 Length=292872 Score = 150 bits (166), Expect = 3e-31 Identities = 180/243 (74%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| |||||||| || || |||||||| ||||||||| Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || || || || |||||||| |||||||| |||||||| || Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||||| || |||||||| | |||||| ||||| | || ||||| || Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAATTGAA 156061 || |||||| | || ||||| | || || ||||| || || ||| | |||| || Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGGT-TCCAATTAAA 166405 Query 156062 TAA 156064 ||| Sbjct 166406 TAA 166408 >seq38 Length=237352 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||| |||| |||||||| | || || | ||| || ||||| || || || Sbjct 109522 AAAATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGTCC 109463 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||| ||| || || ||| | ||||| |||||| |||||||| || | || Sbjct 109462 AATGACTCGATTGAGAATGTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTGAT 109403 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||||||||| || || || | || ||| ||||||||||| ||||| Sbjct 109402 CAACAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAGAACTTTATCGGATTAC 109343 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| || || || || || ||||| || ||||| |||||| | || ||| Sbjct 109342 AATGTACAAAAGGATGCTACTCTTCACTTGGTGTTGAGATTACGTGGTGGT 109292 >seq151 Length=76492 Score = 113 bits (124), Expect = 7e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || |||||| ||||| | || ||| | || || | ||| || ||||| || || || Sbjct 50803 AACAACATGCAATTATTTGTCAAGACACTTACAGGTAGAACGATCACATTGGATGTTGAG 50862 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| ||| || || ||| | ||| | |||||| ||||| || || | Sbjct 50863 TCCAATGACTCAATTGAGAATGTTAAACAGAAAGTCACAGATAAGGAAGGTATTCCAGCG 50922 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||||| | ||||||||||| |||||||| | || ||| ||||||||||| ||| Sbjct 50923 GATCAACAGCGTTTGATTTATGCTGGTAAGCAATTGGAGGATGGAAGAACTTTATCGGAT 50982 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAA 156056 |||||| || || || || || ||||| || |||| ||||||||||| ||| | || Sbjct 50983 TATAATGTACAAAAGGATGCAACTCTTCACTTGATGTTGAGATTAAGAGGTGGTATGCAA 51042 Query 156057 TT 156058 || Sbjct 51043 TT 51044 >seq82 Length=211372 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || ||||| || || || || || || || |||||| Sbjct 147933 AATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAA 147874 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || || || || ||||| || ||||| || |||||||| || Sbjct 147873 CGACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 147814 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||| | |||||| ||||| | |||||| |||||| || || || || || Sbjct 147813 ACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAA 147754 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGT 156052 || || ||| || | || | || || || || ||||| ||||| ||||| Sbjct 147753 CAT-TCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGGTGT 147703 >seq29 Length=427163 Score = 105 bits (116), Expect = 1e-17 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| ||||| ||||| || || || || ||||| ||| | Sbjct 49048 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTGAATCTAA 49107 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||||| || || || |||||||| || || || || ||||| || Sbjct 49108 CGACACAATCGAGAACGTCAAGTCAAAGATTCAAGATAAGGAGGGGATTCCACCAGATCA 49167 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||||| || |||||||| | |||||| |||||| | || ||||| || Sbjct 49168 ACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACAA 49227 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| || | || ||||| | || | ||||||||||| ||| Sbjct 49228 CAT--CCAAAAGGAATCAACTCTTCACCTTGTTCTGAGATTAAGAGGTGGT 49276 >seq76 Length=223365 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 || || ||||| || ||||| || |||||||| |||||||||||||||| ||| |||||| Sbjct 84430 AAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCTGGTAAG 84371 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCA 156025 || | || ||| |||||| || || || || || || || ||| || | || || || Sbjct 84370 CAATTGGAGGATGGCAGAACATTGTCTGACTACAACAT-TCAAAAGGAATCCACTCTCCA 84312 Query 156026 TTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || ||||| ||||| ||| Sbjct 84311 CTTGGTCTTGAGATTGAGAGGTGGT 84287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731866748818400