Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq120 118 2e-21 seq42 118 2e-21 seq29 114 3e-20 seq151 105 1e-17 seq76 95.1 2e-14 seq38 86.0 1e-11 >seq120 Length=320511 Score = 118 bits (130), Expect = 2e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || |||||||| | | ||| || ||||| | ||||| || ||| || | || || || Sbjct 60814 ATTCCACCTCTCAATCTTAAGACCAAATGAAGGGTAGCATCCTTTTGA-ACGTTGTAGTC 60872 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | ||||| | |||| |||||||| || || ||| |||| || | ||||||||||| Sbjct 60873 AGAGAGTGTTCTTCCATCCTCCAATTGCTTGCCTGCATAGATCAAACGCTGTTGATCAGC 60932 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| |||||| ||||| | || ||||| || || || || || Sbjct 60933 TGGAATTCCTTCCTTATCTGTGATTTTGCTCTTCACATTCTCAATCGAGTCATTAGACTC 60992 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | || || ||| ||||||| | |||||| | ||||| ||||| || Sbjct 60993 AACCTCCAATGTGATAGTTCTACCAGTGAGTGTTTTGACAAATAGTTGCATGTT 61046 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || |||||||| | ||||| | |||| ||||||||||| ||||| | ||||| | ||| Sbjct 60637 TTGTAATCAGAGATTGTTCTTCCATCCTCCAATTGTTTGCCAGCGTAAATTAAACGTTGT 60696 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 ||||| | ||| ||||| |||||||| ||||| | || ||||| || || || Sbjct 60697 TGATCGGCTGGAATTCCCTCTTTATCAGCAATTTTGCTCTTCACATTCTCAATCGAGTCG 60756 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || |||||||| | || || ||||| |||||||| ||||| | ||| | |||||| Sbjct 60757 TTGGACTCTACTTCCAATGTGATAGTTTTTCCAGTTAAGGTTTTCACAAACAATTGCATT 60816 >seq42 Length=292872 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || || || | ||| | || || ||| || || || Sbjct 165713 ATACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCG 165654 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | | || |||||||||||||||||||| || || | |||||||||||| Sbjct 165653 GACAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGT 165594 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || || |||| || || || | || ||||| Sbjct 165593 GGAATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCG 165534 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| ||||| || || |||||||| | || || | || || ||||| || Sbjct 165533 ACTTCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATCTT 165481 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | || || || || || || | ||||| || || |||||| Sbjct 165941 ATACCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCA 165882 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | | || || ||||| || || |||||||| | ||| ||||| || ||| Sbjct 165881 GACAAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGT 165822 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || || ||| || || || | ||| || || Sbjct 165821 GGAATTCCTTCCTTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCA 165762 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || || || || ||||||| || || ||||| Sbjct 165761 ACCTCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || || || | |||| | | || |||||||||||||||||||| | Sbjct 166128 CTTTTGA-ATGTTGTAGTCGGAGAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAA 166070 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | || | |||||||| ||||| || ||||| |||||||| || || | || || || Sbjct 166069 TCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTGCTCTTCACGTTTT 166010 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | || ||||| ||||| | |||||| || |||||||| | || || | | Sbjct 166009 CGATGGTGTCGTTGGATTCAACTTCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGACGA 165950 Query 192527 ATATCTGCAT 192536 | || ||||| Sbjct 165949 AGATTTGCAT 165940 >seq29 Length=427163 Score = 114 bits (126), Expect = 3e-20 Identities = 170/238 (71%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| || | | || | || | ||| | || ||| || || || || || Sbjct 48784 ATACCACCTCTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGA-ATGTTGTAGTC 48726 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || |||| | |||| || ||||| || || |||||||| | ||| ||||||||||| Sbjct 48725 GGACAAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGG 48666 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC----G 192481 ||| |||||||| || ||||| || || |||| || ||| | || | || | | Sbjct 48665 TGGAATTCCTTCCTTGTCTTGGATCTTGCTTTTCAC----GTTCTCGATTGTGTCGTTGG 48610 Query 192482 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||| ||||| ||||| || || || |||||||| || || | || || ||||| || Sbjct 48609 ATTCGACTTCAAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTT 48552 >seq151 Length=76492 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || | || || | ||| || || || | ||||||||| Sbjct 51038 ATACCACCTCTTAATCTCAACATCAAGTGAAGAGTTGCATCCTTTTGTACATTATAATCC 50979 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| |||| | |||| |||||||| ||||||||| | || || | ||||||||| | | Sbjct 50978 GATAAAGTTCTTCCATCCTCCAATTGCTTACCAGCATAAATCAAACGCTGTTGATCCGCT 50919 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||| | ||| | ||| ||||| || || || || || Sbjct 50918 GGAATACCTTCCTTATCTGTGACTTTCTGTTTAACATTCTCAATTGAGTCATTGGACTCA 50859 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 || || | || || ||| |||| || | ||| || | ||||| ||||| || || Sbjct 50858 ACATCCAATGTGATCGTTCTACCTGTAAGTGTCTTGACAAATAATTGCATGTTGTT 50803 >seq76 Length=223365 Score = 95.1 bits (104), Expect = 2e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCA 192366 |||||||||| | | || || || || | ||| | || ||| || || || || ||| Sbjct 84286 TACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGA-ATGTTGTAGTCA 84344 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||||| |||| |||||||| ||||||||||| || ||||| |||||||| || Sbjct 84345 GACAATGTTCTGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGA 84404 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 || || ||||| || ||||| || || Sbjct 84405 GGAATACCTTCCTTGTCTTGGATCTT 84430 >seq38 Length=237352 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || |||||||| || | || || || |||| ||| | || ||| || || || || || Sbjct 109062 ATTCCACCTCTGAGTCTCAAAACCAAGTGTAGAGTGGAATCCTTTTGA-ATGTTGTAGTC 109120 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || |||| | |||| |||||||| |||||||||||||| | ||| |||||||| | Sbjct 109121 GCTCAAAGTTCTTCCATCCTCCAATTGCTTACCAGCAAAGATAATTCTTTGTTGATCCGA 109180 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || || || || ||| | |||||| | |||| || | || Sbjct 109181 AGGAATACCATCCTTTTCAAAAATCTTACTCTTTACACTCTCAATAGTGTCATTCATCTC 109240 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | | || | ||| || ||||| |||||||| ||| | | ||| | ||||| Sbjct 109241 TGCCTCCAAAGTGATTGTTTTTCCAGTTAAAGTTCTCACAAAGAGTTGCAT 109291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984472759764900