Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq42 131 3e-25 seq93 122 2e-22 seq29 109 1e-18 seq151 96.9 6e-15 >seq42 Length=292872 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| || || || || || || | ||||| ||| || ||||| Sbjct 165941 ATACCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCA 165882 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | |||| || ||||| || || ||||| || | ||| |||||||| ||| Sbjct 165881 GACAAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGT 165822 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || ||| || || || ||||| || || Sbjct 165821 GGAATTCCTTCCTTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCA 165762 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| || || || || ||||||| ||| || ||||| Sbjct 165761 ACCTCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || | ||| | || || || || || || Sbjct 165713 ATACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCG 165654 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | |||| ||||||||||||||||||||||| || | ||||| |||||| Sbjct 165653 GACAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGT 165594 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || |||| || || || || || ||||| Sbjct 165593 GGAATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCG 165534 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| || || |||||||| | || || | ||| || ||||| || Sbjct 165533 ACTTCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATCTT 165481 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || | || || | |||| ||||||||||||||||||||||| || | Sbjct 166122 AATGTTGTAGTCGGAGAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACG 166063 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| || ||||| || ||||| |||||||| || || | || || || || || Sbjct 166062 TTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTGCTCTTCACGTTTTCGATGGT 166003 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || ||||| ||||| | |||||| || |||||||| | || || | ||| || || Sbjct 166002 GTCGTTGGATTCAACTTCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAGATTTG 165943 Query 172067 CAT 172069 ||| Sbjct 165942 CAT 165940 >seq93 Length=103736 Score = 122 bits (134), Expect = 2e-22 Identities = 529/842 (63%), Gaps = 21/842 (2%) Strand=Plus/Plus Query 38838 TATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTCATA 38897 |||||| |||| | || || || ||||| || || || | ||| || | |||||| Sbjct 84579 TATTCACCAACTCTCTTCTCAAAGAAGTTCGTCTTACCAGACACTGAAATCATATTCATC 84638 Query 38898 AAATCAAATGGATTTTTGGTATTATAATATTTTTC---TCCTATCAATACATATAATAAT 38954 |||| |||||||||| | | ||| || || ||||||| | ||| | |||| Sbjct 84639 CAATCGAATGGATTTTGGACAAGGTAAACCTTATCATATCCTATCGAGACA---AGTAAT 84695 Query 38955 CTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTA 39014 | ||| || |||||||||| |||||| ||| | | |||||||||| | || | Sbjct 84696 CGATCAGCAACAAATTCAATGTATTGTTGCATGAGACGAGAATTCATACCAATCAAGTCC 84755 Query 39015 AATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcata 39074 | || | | || ||| ||||| || || || || ||||||| | | | || Sbjct 84756 ACAGGGAGAGATTCTCGAATGAATTCCTTCTCAATCTCAACAGCTTCACTGACCA--ATG 84813 Query 39075 attatattattttttgat--aattt---atatttaatatgattcgcatataGTAAACATG 39129 | | || | |||||| ||||| |||||| | | | | ||| | | ||| | Sbjct 84814 AATGTACAACCTTTTGAGGCAATTTGGTATATTTGA---GCATGGAATACAAGAGACAAG 84870 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189 |||| ||||| ||||| ||||| || | ||| || |||||||| || || ||||| | Sbjct 84871 CAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCAG 84930 Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 39249 |||| || |||||||| || | |||||| || || ||| | | |||||| |||| Sbjct 84931 GCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATAC 84990 Query 39250 CCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCC 39309 | |||||||| ||||| || || | || | | |||||| | ||||| |||| Sbjct 84991 CTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAACA---AGTTATCCGAGTTGATCC 85047 Query 39310 AATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA 39369 | || | |||||| || || |||| | || || | | | || || || || || | Sbjct 85048 ATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGA 85107 Query 39370 ATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAG 39429 || |||||||| || | Sbjct 85108 GACGATGTCTTTCTCTCGTGTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCTCTG 85167 Query 39430 AATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAA 39489 ||| | | || || || ||||| ||| ||| || || ||||| | | |||| Sbjct 85168 CATGAATATTCTCAATGGCAATTTGGAATCCATAGAAACATCTGGCTTCAGGAATTTGAA 85227 Query 39490 CTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGA 39549 |||| | | ||| ||| | || |||||| ||||||||||| || || || |||| Sbjct 85228 CTTCAGCCATAAATTGTTGACACAAGTTCTCATTCACAATACCATCGGAGGCAGCAAAGA 85287 Query 39550 ATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAA 39609 | || |||||| || || || |||| |||||| || | | ||||||| ||| Sbjct 85288 AGGCCAAAACAGTCTTGATGAAGTGTTGTTCATTGGTATTGAGAGTTTCCCATTGAGCAA 85347 Query 39610 GATC-GTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATAC 39668 ||| || || | ||| |||||||| ||||| |||||||| | || || || ||| Sbjct 85348 TATCTGTGTG-GAGATCCACTTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTCTTGTAC 85406 Query 39669 AT 39670 || Sbjct 85407 AT 85408 >seq29 Length=427163 Score = 109 bits (120), Expect = 1e-18 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| | || | || | ||| | || || ||| || || || Sbjct 48784 ATACCACCTCTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCG 48725 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || || ||||| || || ||||| || | ||| ||||| |||||| Sbjct 48724 GACAAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGT 48665 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || |||| || || || || || ||||| Sbjct 48664 GGAATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCGATTGTGTCGTTGGATTCG 48605 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| || || || |||||||| || || | ||| || ||||| || Sbjct 48604 ACTTCAAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTT 48552 >seq151 Length=76492 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || | || || | ||| || || || | ||||||||| Sbjct 51038 ATACCACCTCTTAATCTCAACATCAAGTGAAGAGTTGCATCCTTTTGTACATTATAATCC 50979 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | | || |||||||| ||||||||| |||| || | |||||| || | | Sbjct 50978 GATAAAGTTCTTCCATCCTCCAATTGCTTACCAGCATAAATCAAACGCTGTTGATCCGCT 50919 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||| | ||| | ||| ||||| || | || || || Sbjct 50918 GGAATACCTTCCTTATCTGTGACTTTCTGTTTAACATTCTCAATTGAGTCATTGGACTCA 50859 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 || || | || || ||| |||| || | ||| || | |||| ||||| || || Sbjct 50858 ACATCCAATGTGATCGTTCTACCTGTAAGTGTCTTGACAAATAATTGCATGTTGTT 50803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905129505649200