Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq93 127 6e-24 seq226 120 9e-22 seq173 96.9 1e-14 seq1 96.9 1e-14 seq29 93.3 1e-13 >seq93 Length=103736 Score = 127 bits (140), Expect = 6e-24 Identities = 478/734 (65%), Gaps = 32/734 (4%) Strand=Plus/Minus Query 133227 TTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTA 133286 |||| || || |||||||| ||||||||||| ||| || || | || |||| Sbjct 85296 TTTTGGCCTTCTTTGCTGCCTCCGATGGTATTGTGAATGAGAACTTGTGTCAACAATTTA 85237 Query 133287 TGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAA 133346 ||| ||||||||| | | |||||| | || ||||| | || ||||| || || | Sbjct 85236 TGGCTGAAGTTCAAATTCCTGAAGCCAGATGTTTCTATGGATTCCAAATTGCCATTGAGA 85177 Query 133347 ATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGA 133406 |||| ||| | | ||||| ||||||||||| || ||||| || || || ||| Sbjct 85176 ATATTCATGCAGAGATGTATTCAACTCTAATTGAAACCTACATTAAGGACAC--GAGAGA 85119 Query 133407 AGCACA--AACTATTCAACGCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACT 133463 | ||| || ||||| |||||| | | | |||| | || ||||||| || | Sbjct 85118 AAGACATCGTCTCTTCAATGCCATT-GATACTGTTCCATCCGTTCAAAAGAAGGCTCGTT 85060 Query 133464 GGGCTATTAAATGGATCCA---GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTT 133520 ||||| | ||||||||| | ||| || | || |||||| || | |||| | Sbjct 85059 GGGCTTTGAAATGGATCAACTCGGATAA-CTTG-----TTTGCTGAACGATTGATTGCCT 85006 Query 133521 TTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAA 133580 ||||| || || || || || || ||||| | ||||| || || |||||| | || | Sbjct 85005 TTGCTTGTGTGGAAGGTATCTTCTTTAGTGGATCTTTCTGTTCCATCTTTTGGATGAAGA 84946 Query 133581 AGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCAC 133640 || | ||| | | |||||| || || || || ||| | ||||| | || || | | Sbjct 84945 AGAGAGGTTTGATGCCTGGATTGACCTTCTCCAATGAATTGATTTCTCGAGATGAAGGAT 84886 Query 133641 TTCACACCGAATTTG-----CCGTTTTACTTCACTCTAAATTAGAGCGA--CCACTCAAA 133693 | ||||| || |||| | || || | || || || || | | | |||||| Sbjct 84885 TACACACGGACTTTGCTTGTCTCTTGTATTCCATGCTCAAATATACCAAATTGCCTCAAA 84826 Query 133694 AAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTA-TCAA 133752 | | | ||| | | | || ||||| ||||| |||||| ||||| | || | Sbjct 84825 AGGTTGTACATT----CATTGGTCAGTGAAGCTGTTGAGATTGAGAAGGAATTCATTCGA 84770 Query 133753 TAGTGCTCTGCC-GTGCCGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATATTG 133811 | | |||| || ||| || |||||||||||| | || ||||| | || |||| Sbjct 84769 GAAT-CTCTCCCTGTG-GACTTGATTGGTATGAATTCTCGTCTCATGCAACAATACATTG 84712 Query 133812 AATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTCCGCCA 133871 ||||||| ||||| |||| || | |||| |||||| ||||| | | | Sbjct 84711 AATTTGTTGCTGATCGATTACTTGTCTCGATAGGATATGATAAGGTTTACCTTGTCCAAA 84652 Query 133872 ATCCATTCGACTGGATGGAGAGCATTAGCATTGAAT-CAAAGACTAATTTCTTCGAGGCG 133930 |||||||||| |||||| | | ||| || || | ||||| || ||||| ||| | Sbjct 84651 ATCCATTCGATTGGATGAATATGATT-TCAGTGTCTGGTAAGACGAACTTCTTTGAGAAG 84593 Query 133931 AGGGTAGCCGAATA 133944 || || | ||||| Sbjct 84592 AGAGTTGGTGAATA 84579 >seq226 Length=57197 Score = 120 bits (132), Expect = 9e-22 Identities = 216/314 (69%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||||||||||||| |||||| || | | ||||||||||||||| ||||| || Sbjct 25878 CATAATGTCTTCCATAGCCTTGATCAATCTTCTTTGAATATAACCAGTTTCGGATGTCTT 25819 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || ||||| || | || ||||||| ||||||| |||||||| | |||| || Sbjct 25818 GACGGCAGTATCGATCAAGCCTTCACGACCTCCCATAGTGTGGAAGAAGAATTCTTGTGG 25759 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 || || | | | | ||| | ||||||| ||||| || || || || Sbjct 25758 AGTAAGACCTCTGAGATATGAGTTGGCAACGAATCCACGACTTTCAGGTCCATGATCATC 25699 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 || | ||||| |||| || || || | | || ||||| ||||| || || ||||| Sbjct 25698 CTGAGAGAAGTGAGGCAATGTTCTATTACGAAAACCATATGGAATACGTTTACCTTCAAC 25639 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCCTTGGAG 302862 ||| ||||| || | || | ||| || || ||||| || ||| || ||||| || Sbjct 25638 GTTTTGCTGACCAACACAAGCAATAATTTGTGAAATGTT--AATGTATGAACCCTTTGAA 25581 Query 302863 CCAGCATTTACCAT 302876 |||||| | ||||| Sbjct 25580 CCAGCAGTGACCAT 25567 Score = 87.8 bits (96), Expect = 5e-12 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||| |||||| ||| |||||||| || ||||| ||| || | ||||||||||| Sbjct 26720 AATTCCTTCAA-ACGAGGAACACCCAAAGTAACGTT---CTTTGAAGAGACACCAGCAAA 26665 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 ||||||||| |||| ||| | |||||| | || ||||| ||| ||| || |||| Sbjct 26664 GTGGAAAGTGTTCAAAGTCATTTGAGTGGCAGGTTCACCGATAGATTGAGCAGCAACGGA 26605 Query 301935 ACCAACCATTTCTCCTGGT 301953 || |||||||| |||||| Sbjct 26604 TCCCACCATTTCACCTGGT 26586 >seq173 Length=57208 Score = 96.9 bits (106), Expect = 1e-14 Identities = 110/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTT-AGACTTGGACGCAACACCAGCAA 301873 |||||| | |||||| |||||||| || ||||| | ||| | |||| ||||||| Sbjct 29888 AATTTCCTTAATACGAGGAACACCCAAAGTAACGTTCATACTGG----CAACTCCAGCAA 29943 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCA 301933 |||||||||| |||| ||| | |||||| |||||||||||||| ||| | ||||| Sbjct 29944 AGTGGAAAGTTTTCAAAGTCATTTGAGTGGTTGGCTCACCAATGGATTGGCCAGCAATAC 30003 Query 301934 TACCAACCATTTCTCCTGGTGCTACA 301959 |||||| |||||| || ||||| Sbjct 30004 CACCAACAGGTTCTCCAGGATCTACA 30029 >seq1 Length=149384 Score = 96.9 bits (106), Expect = 1e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||||||||||||||| ||||| |||||||| |||||||||||||||||||| | || Sbjct 116023 CCGTGTGAAATCATACAGTCACGTTCCATTTCTCCGAAACGAAGACCACCATCTCTGGCA 116082 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | ||| ||| |||| || | || | || | |||||| ||| || || | Sbjct 116083 CGACCTTCGACAGGTTGTCTTGTCAAGTTTTGGAGAGGACCTCTGGCACGAGAGTGAATC 116142 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||||| | ||||| ||||| | ||| ||||| | | || || || ||||| Sbjct 116143 TTATCGTCGACCATGTGCTTCAAACGTTGGTAATAGGTTGGGCCAATAAAGAT 116195 >seq29 Length=427163 Score = 93.3 bits (102), Expect = 1e-13 Identities = 189/271 (70%), Gaps = 15/271 (6%) Strand=Plus/Minus Query 288882 GTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTT---GCTT 288938 ||| | ||| |||| |||||||||||||||||| ||||||| | | ||| | | Sbjct 404500 GTCCAGTATTTCGGATCTGTTTGTTGCTGCCAAAACAACAACAC---CAGTTGCAGGAGT 404444 Query 288939 AAATCCATCCATACTTGTTAAA-ATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 ||| |||||||| | | || | ||| || || || | ||| |||||||||||| | Sbjct 404443 AAAACCATCCATT-TCGACAAGCAATTGGTTCAGAGTATTTTCTCTTTCATCATTTCTTC 404385 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | | ||| || || ||| ||| | ||| ||||||||||||||||||||||||| Sbjct 404384 C-CATAAATTTTCCTGTTC-CTC-TTTGTCGACCCACAGCATCAATTTCGTCAATGAAAA 404328 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGC--AAATAATTCTCTTACACGGGATGCTCC 289115 | | | |||| ||||| | || || | || |||| || || | | | || Sbjct 404327 TAATTGATGGAGCATTTTCCTTTGC--TTCCTTGAACAATTTTCGAACTCTTGCAGGACC 404270 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAA 289146 || |||||| |||||| |||||||||||| Sbjct 404269 AACACCAACCACCATTTCAACAAATTCAGAA 404239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471806775701438