Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_021326.1 Length=45242 Score E Sequences producing significant alignments: (Bits) Value seq554 578 1e-160 >seq554 Length=1012 Score = 578 bits (640), Expect = 1e-160 Identities = 379/416 (91%), Gaps = 3/416 (1%) Strand=Plus/Minus Query 3271 AGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCTAAAACGA 3330 ||||||||||||| | || ||||||| ||| |||||||||||||||||||||||||||| Sbjct 429 AGCCCGAAGGCTAACGTACAAATAGATTAAATTTTGAACACATTGCTGTGTCTAAAACGA 370 Query 3331 TTATAGCATAAATGACGAATATTTCTAGCTCAAAATTATTATATTTCAATGataaaattt 3390 |||||||||| ||||||||||||||| ||| ||||||| ||||||||||||||||| ||| Sbjct 369 TTATAGCATAGATGACGAATATTTCTTGCTTAAAATTAATATATTTCAATGATAAATTTT 310 Query 3391 tatggatttgttaataattatttaattgatttacataaataataattctaaa--attaCT 3448 ||| |||||||||||||||||||||| ||| | ||||||||| ||| | || | |||| Sbjct 309 TATATATTTGTTAATAATTATTTAATTAATTCAAATAAATAATTATTGTTAATAAATACT 250 Query 3449 TTGTAATCGATTGCAAATAAGTTATAGGAGaaaataaaatgaataaaaaactattaacaa 3508 | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 249 CTATAATCTATTGCAAATAAGTTATAGGAGAAAATAAAATGAATAAAAAACTATTAACAA 190 Query 3509 aaaCATTAATAGCAAGTGCTTTAGTTTTAACAACAGTAGGTTCAGGTTTTCATTCTTCTT 3568 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189 AAACATTGATAGCAAGTGCTTTAGTTTTAACAACAGTAGGTTCAGGTTTTCATTCTTCTT 130 Query 3569 CAAATTATAATGGTATTAATAACGTTGCAAAAGCTTCTGAAATAACAGATAGCGAATTGT 3628 ||||||||||||||||||||||||||||||| |||||||||||||||||||| || || | Sbjct 129 CAAATTATAATGGTATTAATAACGTTGCAAAGGCTTCTGAAATAACAGATAGAGACTTAT 70 Query 3629 GGAAAAATGTAAGAGACGCTTTAAAAGACGCAAATATCATTGATAAAACAGACAAA 3684 |||||||||||||||| ||||| ||||| |||||||| || ||||| |||| |||| Sbjct 69 GGAAAAATGTAAGAGATGCTTTGAAAGAAGCAAATATTATCGATAATACAG-CAAA 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144651814010352