Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_021801.1 Length=42902 Score E Sequences producing significant alignments: (Bits) Value seq554 829 0.0 >seq554 Length=1012 Score = 829 bits (918), Expect = 0.0 Identities = 513/541 (95%), Gaps = 6/541 (1%) Strand=Plus/Plus Query 36964 AGGCAGGTACTACGGTACTTGCCTA-TTTTTTATGCAAATTTaaaaaaaCACTTGCTTAA 37022 ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| |||||| Sbjct 474 AGGCAGGTACTTCGGTACTTGCCTATTTTTTTATGCAAA-TTAAAAAAACACTCGCTTAA 532 Query 37023 TAAACAATTGTTTAGTATAATTATATTTGTAGGTTAGTTGATGACTTACAAATTATGTGT 37082 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 TAAACACTTGTTTAGTATAATTATATTTGTAGGTTAGTTGATGACTTACAAATTATGTGT 592 Query 37083 AAGGAGGTGAAAAGCCTCATGCTAGACATAATAAAAACACTTCTAGAACATCAAGTATTG 37142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 AAGGAGGTGAAAAGCCTCATGCTAGACATAATAAAAACACTTCTAGAACATCAAGTATTG 652 Query 37143 GCAGTACTGATAATTCCAGAAGTGTTAAAACAACTTAGAGAATGGCATCTCGGCTACCTA 37202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 GCAGTACTGATAATTCCAGAAGTGTTAAAACAACTTAGAGAATGGCATCTCGGCTACCTA 712 Query 37203 GACCGAAAGCCAAACAACAAAGATTAACATTATGCTTGGAGCCTGATGGCTCCTCCTTAC 37262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 GACCGAAAGCCAAACAACAAAGATTAACATTATGCTTGGAGCCTGATGGCTCCTCCTTAC 772 Query 37263 ACTTATATAATATAATATTATTTGGAGGTTTTCAATTATGACAGAACAAATGTATTTAAT 37322 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 773 ACTTATATAATATAATATTATTTCGAGATTTTCAATTATGACAGAACAAATGTATTTAAT 832 Query 37323 ATTGTTTTTATTAAGCCTACCATTGTTATTATTTATCGGGAGAAAAACACATTTTTATTG 37382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 833 ATTGTTTTTATTAAGCCTACCATTGTTATTATTTATCGGGAGAAAAACACATTTTTATTG 892 Query 37383 TTTAGATAAAAAGAATGGACGTAGATAATATGAG-TGATTATAAATTAAAAATAATTGAA 37441 |||||||||||||||||||||||| | || | ||| |||||| ||||| ||| | Sbjct 893 TTTAGATAAAAAGAATGGACGTAGTTTCGCTGGGAAAATTTTAAATT-TAAATACTTGGA 951 Query 37442 TTGATCAAAAGTGAT-ATAACA-GGTTACCAAATTCACAAACAAACTGGCGTAGCGCAAT 37499 || ||||||| |||| || || ||||| ||||||||||||||||||||||||||||||| Sbjct 952 TTTATCAAAAATGATCGTAGCATGGTTAGCAAATTCACAAACAAACTGGCGTAGCGCAAT 1011 Query 37500 A 37500 | Sbjct 1012 A 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137163865050432