Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_021863.1 Length=42652 Score E Sequences producing significant alignments: (Bits) Value seq554 829 0.0 >seq554 Length=1012 Score = 829 bits (918), Expect = 0.0 Identities = 513/541 (95%), Gaps = 6/541 (1%) Strand=Plus/Plus Query 41646 AGGCAGGTACTACGGTACTTGCCTA-TTTTTTATGCAAATTTaaaaaaaCACTTGCTTAA 41704 ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| |||||| Sbjct 474 AGGCAGGTACTTCGGTACTTGCCTATTTTTTTATGCAAA-TTAAAAAAACACTCGCTTAA 532 Query 41705 TAAACAATTGTTTAGTATAATTATATTTGTAGGTTAGTTGATGACTTACAAATTATGTGT 41764 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 TAAACACTTGTTTAGTATAATTATATTTGTAGGTTAGTTGATGACTTACAAATTATGTGT 592 Query 41765 AAGGAGGTGAAAAGCCTCATGCTAGACATAATAAAAACACTTCTAGAACATCAAGTATTG 41824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 AAGGAGGTGAAAAGCCTCATGCTAGACATAATAAAAACACTTCTAGAACATCAAGTATTG 652 Query 41825 GCAGTACTGATAATTCCAGAAGTGTTAAAACAACTTAGAGAATGGCATCTCGGCTACCTA 41884 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 GCAGTACTGATAATTCCAGAAGTGTTAAAACAACTTAGAGAATGGCATCTCGGCTACCTA 712 Query 41885 GACCGAAAGCCAAACAACAAAGATTAACATTATGCTTGGAGCCTGATGGCTCCTCCTTAC 41944 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 GACCGAAAGCCAAACAACAAAGATTAACATTATGCTTGGAGCCTGATGGCTCCTCCTTAC 772 Query 41945 ACTTATATAATATAATATTATTTGGAGGTTTTCAATTATGACAGAACAAATGTATTTAAT 42004 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 773 ACTTATATAATATAATATTATTTCGAGATTTTCAATTATGACAGAACAAATGTATTTAAT 832 Query 42005 ATTGTTTTTATTAAGCCTACCATTGTTATTATTTATCGGGAGAAAAACACATTTTTATTG 42064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 833 ATTGTTTTTATTAAGCCTACCATTGTTATTATTTATCGGGAGAAAAACACATTTTTATTG 892 Query 42065 TTTAGATAAAAAGAATGGACGTAGATAATATGAG-TGATTATAAATTAAAAATAATTGAA 42123 |||||||||||||||||||||||| | || | ||| |||||| ||||| ||| | Sbjct 893 TTTAGATAAAAAGAATGGACGTAGTTTCGCTGGGAAAATTTTAAATT-TAAATACTTGGA 951 Query 42124 TTGATCAAAAGTGAT-ATAACA-GGTTACCAAATTCACAAACAAACTGGCGTAGCGCAAT 42181 || ||||||| |||| || || ||||| ||||||||||||||||||||||||||||||| Sbjct 952 TTTATCAAAAATGATCGTAGCATGGTTAGCAAATTCACAAACAAACTGGCGTAGCGCAAT 1011 Query 42182 A 42182 | Sbjct 1012 A 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136363870503432