Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq157 87.8 2e-12 seq1 87.8 2e-12 >seq157 Length=153911 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/216 (70%), Gaps = 15/216 (7%) Strand=Plus/Plus Query 172772 TTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAATATTGGATT 172831 |||||| | |||||||||||| |||| | || || || ||||||| |||||||| || Sbjct 125340 TTGTCAAATGTATCAAAGATCATGTGATATGGGTTTAGGAGTACCTTTTAATATTGCATC 125399 Query 172832 TTATTCATTTTTAATACTTGTGT-------TAAGTAAATGGTGCAATTTAACTCCAGGAA 172884 ||| | || || |||||| | ||||| ||| ||| || ||||| Sbjct 125400 CTATGCTTTATT--GACTTGTATGATGGCACAAGTATGTGG----ATTGAA-ACCAGGTG 125452 Query 172885 AGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCTTTAAAGG 172944 | ||| | ||| || ||| ||| ||| || ||||| |||||| ||||||| || || | Sbjct 125453 ATTTTGTACATTGTTGTGGTGATTGTCATGTCTATTCGAATCATATTGAACCATTGAAAG 125512 Query 172945 TTCAATTAAAAAGAAA-ACCATATACTTTTCCAAAT 172979 | |||||| | ||||| ||| | ||||| | |||| Sbjct 125513 TACAATTAGAGAGAAATCCCAAACACTTTCCAAAAT 125548 >seq1 Length=149384 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 194277 TCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGG 194336 ||||||||| ||||||||||| | ||| |||||| ||| |||| || || | ||| Sbjct 116493 TCAAAAAGGTACTTGTGGTATCACTTACAGACAAGAGGATTTGCCTTTCACTCGTGAAGG 116434 Query 194337 TATGGTACCAGATATTATTATCAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCA 194396 ||| || |||||||||||| ||||||| || ||||| || | ||||||||| ||| Sbjct 116433 TATTGTGCCAGATATTATTGTCAATCCGCATGCCATTCCATCTCGTATGACCATTGGTCA 116374 Query 194397 AATTATTG 194404 | |||| Sbjct 116373 GCTCATTG 116366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632485061887120