Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq42 178 1e-39 seq82 167 2e-36 seq29 143 2e-29 seq76 129 5e-25 seq26 123 2e-23 seq120 107 2e-18 seq38 107 2e-18 seq36 98.7 9e-16 seq66 82.4 7e-11 >seq42 Length=292872 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || || || ||||| ||||| || |||||||| ||| ||| Sbjct 165483 GATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAATCCAA 165542 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||| |||||||||||||| |||||||| || || ||||| Sbjct 165543 CGACACGATTGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCA 165602 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||||||||| ||||| || ||||| |||| || |||| | |||| || || || Sbjct 165603 ACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAA 165662 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||||||||| || || |||||||| ||| ||||| | || || Sbjct 165663 CATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 165710 Score = 141 bits (156), Expect = 8e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| ||||||| | ||||| || || ||||| || || || || ||| Sbjct 165712 ATGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAAT 165771 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||||||||||||| |||||||| || || || ||| Sbjct 165772 GATACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 165831 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||||||||| || || | || || |||| | |||| ||||| ||| Sbjct 165832 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTACAAC 165891 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||| ||||| ||| | |||||||| ||| || Sbjct 165892 ATTCAAAAAGAATCAACATTGCACTTGGTTTTGAGA 165927 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| || ||||| | ||||| ||| ||| | Sbjct 165940 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAAC 165999 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| ||||| || ||||| || || || |||||| Sbjct 166000 GACACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 166059 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || ||||| |||| || |||| | || || || ||| Sbjct 166060 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAAC 166119 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| ||| | ||| | || | ||||| | ||||| Sbjct 166120 ATTCAAAAGGAATCCACATTGCACCTTGTTCTTAGATTGAGAGGAGG 166166 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| ||||||| | || || || || ||||| | ||||| ||| ||| Sbjct 166168 ATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAAT 166227 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||| || ||||| || ||||| || ||| Sbjct 166228 GATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAA 166287 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| || || || || || |||| ||| |||| | | || ||||| ||| Sbjct 166288 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAAC 166347 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| || || || || ||| | || ||| ||||| | ||||| Sbjct 166348 ATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGG 166394 >seq82 Length=211372 Score = 167 bits (184), Expect = 2e-36 Identities = 184/245 (75%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || || |||| || | |||||||| || || || | || || ||| || Sbjct 147935 ACAATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCC 147876 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||| |||||||| ||||| || ||||| ||| Sbjct 147875 AACGACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGAT 147816 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 |||||| | |||||||||||||| || || |||| ||| |||| | |||| || || Sbjct 147815 CAACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTAC 147756 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAG 24940 ||||||||||||||||| ||| | |||||||| ||| ||||| | ||||| | | ||| Sbjct 147755 AACATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGGTGTCATTGAA 147696 Query 24941 CCAAC 24945 ||||| Sbjct 147695 CCAAC 147691 >seq29 Length=427163 Score = 143 bits (158), Expect = 2e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || |||| || || ||||| || || ||||| ||| ||| | Sbjct 48555 ATGCAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATCCAAC 48614 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| |||||||||||||| |||||||| || || |||||| Sbjct 48615 GACACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAA 48674 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||||||||| || || | || ||| |||| | |||| || || ||| Sbjct 48675 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGACTACAAC 48734 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 |||||||||||||| || || ||| Sbjct 48735 ATTCAAAAGGAATCCACTCTCCAC 48758 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | || || || || || || | ||||| ||| | | | Sbjct 49049 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTGAATCTAAC 49108 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||| ||||| || || || || || || |||||| Sbjct 49109 GACACAATCGAGAACGTCAAGTCAAAGATTCAAGATAAGGAGGGGATTCCACCAGATCAA 49168 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || || || |||| ||| |||| | | || ||||| ||| Sbjct 49169 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACAAC 49228 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 || ||||||||||| || || ||| | || || |||| Sbjct 49229 ATCCAAAAGGAATCAACTCTTCACCTTGTTCTGAGATT 49266 >seq76 Length=223365 Score = 129 bits (142), Expect = 5e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||||||| ||||| || ||||| ||||||||| | ||||| ||||| || || Sbjct 84431 AAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCTGGTAA 84372 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 || |||||||| |||| |||| || || ||||||||||||||||| || || || Sbjct 84371 GCAATTGGAGGATGGCAGAACATTGTCTGACTACAACATTCAAAAGGAATCCACTCTCCA 84312 Query 24907 CTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||| ||||| | || || Sbjct 84311 CTTGGTCTTGAGATTGAGAGGTGG 84288 >seq26 Length=133099 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| | || ||||| || ||||| | |||||||| ||| Sbjct 73062 ATGCAAATCTTTGTGAAAACCTTGACTGGTAAGACCATTACCTTGGAAGTAGAGTCCAAT 73121 Query 24764 GACACAGTAGA-AACGGTAAAA-CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||| | | || |||| || | ||||| | || || || ||||| || || |||||| Sbjct 73122 GACTCGATCGAGAACGTCAAGAGCAAAATAGCC--GATAAGGAAGGGATTCCAGCCGATC 73179 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 ||||||| ||||| || || || ||||| | |||||| |||| | |||| ||||| | Sbjct 73180 AACAACGATTGATTTTCGCAGGAAAACAATTAGAGGATGGAAGAACCTTGTCTGATTACA 73239 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | |||| ||||| || || | || ||||||||| ||||| | ||||| Sbjct 73240 GCGTTCAGAAGGATTCTACCTTGCATTTGGTGTTGAGATTGAGGGGAGG 73288 >seq120 Length=320511 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| | ||| | ||||| |||| || |||||||| || | |||||||| ||| | Sbjct 60815 ATGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAAC 60756 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || || ||||| ||||| || |||||||| Sbjct 60755 GACTCGATTGAGAATGTGAAGAGCAAAATTGCTGATAAAGAGGGAATTCCAGCCGATCAA 60696 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| || | || || ||||| |||||||| |||| || || ||||| ||| Sbjct 60695 CAACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACAAC 60636 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | ||||| || ||||| | ||| | |||||| || | || ||||| Sbjct 60635 TTGCAAAAAGATTCGACCATTCACCTTGTGTTGAGACTTCGTGGAGG 60589 >seq38 Length=237352 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| | || ||||||| || || |||| ||| || || | || || || ||| Sbjct 109519 ATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGTCCAAT 109460 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || ||||| || ||| ||| || ||||| || || | |||||| Sbjct 109459 GACTCGATTGAGAATGTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTGATCAA 109400 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| | ||| || ||||| | |||||| |||| | || ||||| || Sbjct 109399 CAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAGAACTTTATCGGATTACAAT 109340 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | |||||||| | || || |||||||||||| |||| || || || Sbjct 109339 GTACAAAAGGATGCTACTCTTCACTTGGTGTTGAGATTACGTGGTGG 109293 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | | ||| |||| || ||||| || || | || | ||| | Sbjct 109291 ATGCAACTCTTTGTGAGAACTTTAACTGGAAAAACAATCACTTTGGAGGCAGAGATGAAT 109232 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||| || || || || || ||| | |||||| Sbjct 109231 GACACTATTGAGAGTGTAAAGAGTAAGATTTTTGAAAAGGATGGTATTCCTTCGGATCAA 109172 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||| || || || |||||||| |||| || || || ||| Sbjct 109171 CAAAGAATTATCTTTGCTGGTAAGCAATTGGAGGATGGAAGAACTTTGAGCGACTACAAC 109112 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||| || || ||||||||||| ||| || Sbjct 109111 ATTCAAAAGGATTCCACTCTACACTTGGTTTTGAGA 109076 >seq36 Length=122865 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 139092 GTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACT 139151 ||| ||||| || ||||| || || | ||||||| | |||||| | |||||| || Sbjct 115451 GTTACACACAGCTACTTCATCTGGAGCTGTGTATTCAATAATTTCAGTACACAAGTTGGA 115510 Query 139152 ACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAG 139211 | |||||||| || | |||||||||||| ||||| ||||| ||||| || ||||| Sbjct 115511 GGATTTGATCGTTCCAAGATTTTGTTGATTTGATTTTCTATTACATGCATCCTTATAAAG 115570 Query 139212 CATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT 139250 ||| || || ||||| || | ||||| ||| ||||| Sbjct 115571 CATGTAAGGAACACCAGTCTCAATTTGTGCCTCAATAAT 115609 >seq66 Length=52705 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/164 (71%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 24771 TAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTT 24830 |||| | ||||| | ||||| ||||||||| || || || | ||||||||||||| Sbjct 159 TAGACAACGTAAAGCGCAAGATTGCAGACAAAGAGGGTATTCCAGCAGATCAACAACGTT 218 Query 24831 TGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAA 24890 | |||| ||| || ||||| | |||||| |||| | || ||||| | ||| | | Sbjct 219 TAATCTATGCTGGAAAACAATTAGAGGATGGAAGAAGTGTTTCTGATTACA--ATTAACA 276 Query 24891 AGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGA 24934 | | ||||| | ||| | || ||| ||||||| ||||| ||| Sbjct 277 AAAACTCGACCATTCACCTTGTTTTGAGATTGCGTGGAGGAGGA 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894371984720