Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq82 100 2e-16 seq76 100 2e-16 seq42 96.9 3e-15 seq26 96.9 3e-15 >seq82 Length=211372 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || || || || || || || ||||| || | || || | Sbjct 147933 AATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAA 147874 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||||| || || ||||| | || ||||| Sbjct 147873 CGACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 147814 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || ||| | || | ||| || || || |||| || | || ||| || | |||||||| Sbjct 147813 ACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAA 147754 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||| ||||| |||||| |||| ||||||||| |||| || Sbjct 147753 CATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGG 147706 >seq76 Length=223365 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||| || ||| | |||| ||| ||||| || ||||||| | || |||| || | ||| Sbjct 84400 GATCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGATGGCAGAACATTGTCTGAC 84341 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAAT 107789 ||||||||||||||||| || || | ||| |||| ||||||||| |||| || || || Sbjct 84340 TACAACATTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGGTAAGAAG 84281 Query 107790 AAAAA 107794 || || Sbjct 84280 AAGAA 84276 >seq42 Length=292872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||| |||||||| || ||||| |||||||| | ||| || | Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || || |||||| ||||| |||||| | || || || Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || ||| | |||| || ||||| || |||| || | | ||| | | || ||||| Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 ||||||||| |||||||| | ||| | || |||||||| |||||| Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATT--GAGGGG 166391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || | || || || || ||||| | ||| || | | Sbjct 165940 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAAC 165999 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||| ||||| ||||| | || ||||| Sbjct 166000 GACACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 166059 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | |||| ||| |||||||| |||| |||| | ||| | | ||||||||| Sbjct 166060 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAAC 166119 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||||||| || || |||||| | || | |||||| |||| |||| Sbjct 166120 ATTCAAAAGGAATCCACATTGCACCTTGTTCTTAGATTGAGAGGAGGAA 166168 >seq26 Length=133099 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 || || |||||||| ||||| ||||| || || || || ||||||||| | ||| ||| Sbjct 73056 TTCAACATGCAAATCTTTGTGAAAACCTTGACTGGTAAGACCATTACCTTGGAAGTAGAG 73115 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 | || | ||| | || || || || |||||||| ||||| | || | Sbjct 73116 TCCAATGACTCGATCGAGAACGTCAAGAGCAAAATAGCCGATAAGGAAGGGATTCCAGCC 73175 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||| || || | |||| || || ||||| | ||||| | | ||| || | || Sbjct 73176 GATCAACAACGATTGATTTTCGCAGGAAAACAATTAGAGGATGGAAGAACCTTGTCTGAT 73235 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 |||| | |||| ||||| ||||| ||||| ||||||||||||| |||||| Sbjct 73236 TACAGCGTTCAGAAGGATTCTACCTTGCATTTGGTGTTGAGATT--GAGGGG 73285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398874009607486