Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq42 141 1e-28 seq29 132 8e-26 seq38 127 3e-24 seq82 107 3e-18 seq76 107 3e-18 seq26 98.7 2e-15 seq120 95.1 2e-14 >seq42 Length=292872 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| || || ||||| || |||||| |||| || || || | Sbjct 165713 TGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAATG 165772 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || ||| || || ||| || ||||| |||||||| || |||| Sbjct 165773 ATACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAAC 165832 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||| ||||| || || |||||||| || ||||| || | ||||| || | Sbjct 165833 AAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTACAACA 165892 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | || || || || || | ||||| |||| Sbjct 165893 TTCAAAAAGAATCAACATTGCACTTGGTTTTGAGACTCAGAGGTGGTA 165940 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || || || || ||| | || || ||| |||| Sbjct 165485 TGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAATCCAACG 165544 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || |||| || || ||| || ||||| |||||||| ||||||| Sbjct 165545 ACACGATTGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAAC 165604 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| ||||||||||| || || ||||| || | || || || | Sbjct 165605 AACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAACA 165664 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| |||| || || || |||| ||||| |||| Sbjct 165665 TCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGGTA 165712 Score = 114 bits (126), Expect = 2e-20 Identities = 169/239 (71%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| || || || || || ||||| | || || ||| || | Sbjct 166169 TGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAATG 166228 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || || || ||| ||| ||||||||||| || || |||| Sbjct 166229 ATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAAC 166288 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || ||||| ||||| || ||| ||||| | | ||||| || | Sbjct 166289 AAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAACA 166348 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT---AAATAAATA 146267 | |||||||| || ||| | || | || || |||| || |||||| || |||||| Sbjct 166349 TTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGGTTCCAATTAAATA 166407 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || || ||||||||| | || || ||| |||| Sbjct 165941 TGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAACG 166000 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || || | || || ||| ||| ||||| |||||||| ||||||| Sbjct 166001 ACACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAAC 166060 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| ||||||||||| || || ||||| | | || || || | Sbjct 166061 AACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAACA 166120 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || | || | || | |||| |||||||| Sbjct 166121 TTCAAAAGGAATCCACATTGCACCTTGTTCTTAGATTGAGAGGAGG 166166 >seq29 Length=427163 Score = 132 bits (146), Expect = 8e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || ||||| || || || || ||| |||| || ||| |||| Sbjct 48556 TGCAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATCCAACG 48615 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || |||| || || ||| || ||||| |||||||| ||||||| Sbjct 48616 ACACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAAC 48675 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||| ||||| || || |||||||| ||| ||||| || | || || || | Sbjct 48676 AAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGACTACAACA 48735 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| |||| | || | || | ||||| |||| Sbjct 48736 TTCAAAAGGAATCCACTCTCCACCTTGTCCTCAGACTCAGAGGTGGTA 48783 >seq38 Length=237352 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||| ||||| | |||||| | ||||| | |||||| || | ||||| || || | Sbjct 109518 TGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGTCCAATG 109459 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| | ||||| ||| | ||||| | ||| |||||||||||| | ||||||| Sbjct 109458 ACTCGATTGAGAATGTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTGATCAAC 109399 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||| ||| || ||||||||||| ||| ||||| ||| | ||||| ||| Sbjct 109398 AACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAGAACTTTATCGGATTACAATG 109339 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 ||||||| || | ||| | || || || || ||||| | || |||| Sbjct 109338 TACAAAAGGATGCTACTCTTCACTTGGTGTTGAGATTACGTGGTGGTA 109291 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||| | || | | ||| ||||| ||||||||||| ||| | || | ||| || | Sbjct 109290 TGCAACTCTTTGTGAGAACTTTAACTGGAAAAACAATCACTTTGGAGGCAGAGATGAATG 109231 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | | |||||| | ||| || || || || ||||| | ||||||| Sbjct 109230 ACACTATTGAGAGTGTAAAGAGTAAGATTTTTGAAAAGGATGGTATTCCTTCGGATCAAC 109171 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| ||||| ||||| || ||| ||||| || | || || || | Sbjct 109170 AAAGAATTATCTTTGCTGGTAAGCAATTGGAGGATGGAAGAACTTTGAGCGACTACAACA 109111 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| || || ||| | || || || || || | ||||| || Sbjct 109110 TTCAAAAGGATTCCACTCTACACTTGGTTTTGAGACTCAGAGGTGG 109065 >seq82 Length=211372 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || || || || || ||| | || || ||| |||| Sbjct 147931 TGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAACG 147872 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || || || ||| || ||||| ||||| || ||||||| Sbjct 147871 ACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAAC 147812 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || || ||||| || ||| ||||| || | || || || | Sbjct 147811 AAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAACA 147752 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||| ||||| || | || || || || |||| ||||||||| Sbjct 147751 TTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGGT 147705 >seq76 Length=223365 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 146087 TAACGATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGA 146146 |||||| || || | ||||| || || || ||| || ||||| ||||| || || Sbjct 84458 TAACGACACCATCGAGAATGTGAAGTCAAAGATCCAAGACAAGGAAGGTATTCCTCCAGA 84399 Query 146147 TCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTA 146206 |||||||||| | |||||||| ||||| ||||| || ||| ||||| || | || || Sbjct 84398 TCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGATGGCAGAACATTGTCTGACTA 84339 Query 146207 TAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAA 146260 || || ||||| ||||| ||| |||| || || || |||| ||||| ||||| Sbjct 84338 CAACATTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGGTAA 84285 >seq26 Length=133099 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| || || || || || ||||| | || ||||| || | Sbjct 73063 TGCAAATCTTTGTGAAAACCTTGACTGGTAAGACCATTACCTTGGAAGTAGAGTCCAATG 73122 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | || | || || || | |||||| ||| ||||| |||||| ||||||||| Sbjct 73123 ACTCGATCGAGAACGTCAAGAGCAAAATAGCCGATAAGGAAGGGATTCCAGCCGATCAAC 73182 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | ||||| ||||| ||||||||||| ||| ||||| || | ||||| | Sbjct 73183 AACGATTGATTTTCGCAGGAAAACAATTAGAGGATGGAAGAACCTTGTCTGATTACAGCG 73242 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | || || || || || | ||||| || || |||| || |||||| Sbjct 73243 TTCAGAAGGATTCTACCTTGCATTTGGTGTTGAGATTGAGGGGAGGT 73289 >seq120 Length=320511 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||| | || | ||||| ||||| |||||||| || || | || ||||| |||| Sbjct 60814 TGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAACG 60755 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| | ||||| || | ||||| |||||| || |||||| ||||||||| Sbjct 60754 ACTCGATTGAGAATGTGAAGAGCAAAATTGCTGATAAAGAGGGAATTCCAGCCGATCAAC 60695 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||| || || |||||||| || ||| ||||| | | ||||| || Sbjct 60694 AACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACAACT 60635 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | |||||||| ||||| || || Sbjct 60634 TGCAAAAAGATTCGACCATTCA 60613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786160759256080