Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq42 123 2e-23 seq82 118 8e-22 seq29 105 5e-18 seq76 98.7 8e-16 seq120 96.9 3e-15 seq26 91.5 1e-13 seq38 87.8 1e-12 >seq42 Length=292872 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| | || || | ||||| || || |||||||||||||| ||||| | Sbjct 166394 CCTCCCCTCAATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAG 166335 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | ||| || ||||| | ||||||||||| || || || ||| Sbjct 166334 AGGGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGA 166275 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || ||||| | ||| |||||| | || | || ||| ||| ||| Sbjct 166274 ATGCCTTCCTTATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACT 166215 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | || || || |||||||| || ||||||||||| || |||||| Sbjct 166214 TCCAATGTAATGGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 166167 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || | || ||||||||||||||||| ||||| | | ||| | || || Sbjct 165920 ACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTTCCGTCTTCT 165861 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||| || || ||| | || | |||||| || || || ||||| || || |||||||| Sbjct 165860 AATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 165801 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||| ||| || |||| | || ||| || || |||||||| || || || Sbjct 165800 ATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAACCTCAAGAGTAATGGTCTTT 165741 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||||||||| || || ||||| Sbjct 165740 CCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| | || || | || | |||||||| ||||||||||| || || | Sbjct 166167 TCCTCCTCTCAATCTAAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCGGA 166108 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || | |||||| |||||| | ||||| | ||| ||||| || || Sbjct 166107 GAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 166048 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| || || ||||| ||| || | || || |||| | ||||| ||| | Sbjct 166047 AATACCTTCCTTATCTTG-AATCTTGCTCTTCACGTTTTCGATGGTGTCGTTGGATTCAA 165989 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | ||| || || || ||||| | ||| || || || || ||||| Sbjct 165988 CTTCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165940 >seq82 Length=211372 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | || ||||| || | || ||||| ||||||||||| || || | Sbjct 147706 CCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGAC 147765 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | ||| || || ||| | ||||||||||| ||||| || ||| Sbjct 147766 AAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 147825 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| ||| |||| |||||| | || | ||||| ||| || Sbjct 147826 ATACCTTCCTTGTCTTG-AATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGAC 147884 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| || || || || || ||||| ||||| || || |||||| Sbjct 147885 CTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATT 147933 >seq29 Length=427163 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || |||||||| ||||||||||| || || | | ||| | ||| || | ||| Sbjct 48757 TGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCCATCTTCTAATTGC 48698 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | || | |||||| ||||| || ||||| || || |||||||| | || Sbjct 48697 TTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTTG 48638 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||| || | || | ||||| ||| ||||||||||| ||||| ||||||||| Sbjct 48637 CTTTTCACGTTCTCGATTGTGTCGTTGGATTCGACTTCAAGAGTGATAGTCTTGCCAGTT 48578 Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || ||||| || Sbjct 48577 AAAGTCTTGACGAAGATTTGCATGTT 48552 >seq76 Length=223365 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || ||||| | || ||||| || || |||||||| ||||||||||| || || | | Sbjct 84288 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAC 84347 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 ||| || | ||| || | ||| || |||||| | ||||||||||| ||||| || || Sbjct 84348 AAT-GTTCTGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGG 84406 Query 29679 AATACCCTCTTTGTCTTG 29696 |||||| || |||||||| Sbjct 84407 AATACCTTCCTTGTCTTG 84424 >seq120 Length=320511 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 |||| || || |||||||| | ||| ||||| | || || | ||| || | |||| Sbjct 60613 TGAATGGTCGAATCTTTTTGCAAGTTGTAATCAGAGATTGTTCTTCCATCCTCCAATTGT 60672 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 |||||||| || || || | ||| ||||| | ||||| |||||||| || | |||||| Sbjct 60673 TTGCCAGCGTAAATTAAACGTTGTTGATCGGCTGGAATTCCCTCTTTATC-AGCAATTTT 60731 Query 29704 TGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| | || | | ||| |||||||| | || |||||||| ||||| Sbjct 60732 GCTCTTCACATTCTCAATCGAGTCGTTGGACTCTACTTCCAATGTGATAGTTTTTCCAGT 60791 Query 29763 TAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| ||||| | |||||| Sbjct 60792 TAAGGTTTTCACAAACAATTGCATT 60816 >seq26 Length=133099 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| | || ||||||||| | || || || || |||| | | ||||| | Sbjct 73288 CCTCCCCTCAATCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGAC 73229 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | |||||| || || | ||||||| ||| ||||| | ||| Sbjct 73228 AAGGTTCTTCCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGGA 73169 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || ||| ||||| | || | | |||| |||||| Sbjct 73168 ATCCCTTCCTTATCGGCTATTTTGCTCTTGACGTTCTCGATCGAGTCATTGGACTCTACT 73109 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 || | || || || || ||||| |||||||| ||||| || ||||| || || Sbjct 73108 TCCAAGGTAATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCATGTTGAA 73056 >seq38 Length=237352 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGAATCATC 29636 ||||| || || ||||| || ||||||||||| || || | ||| || | ||| || Sbjct 109083 ACCAAGTGTAGAGTGGAATCCTTTTGAATGTTGTAGTCGCTCAA-AGTTCTTCCATCCTC 109141 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | ||| || |||||| | || | |||||| ||||||| |||||||| || || || Sbjct 109142 CAATTGCTTACCAGCAAAGATAATTCTTTGTTGATCCGAAGGAATACCATCCTTTTC-AA 109200 Query 29697 TAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 ||| || | || ||| | || | ||||||| | ||| | || | ||| || |||| Sbjct 109201 AAATCTTACTCTTTACACTCTCAATAGTGTCATTCATCTCTGCCTCCAAAGTGATTGTTT 109260 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| ||| | ||||| | ||||| Sbjct 109261 TTCCAGTTAAAGTTCTCACAAAGAGTTGCAT 109291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216505150934