Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq157 86.0 8e-12 seq54 86.0 8e-12 seq1 86.0 8e-12 >seq157 Length=153911 Score = 86.0 bits (94), Expect = 8e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 168899 TTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTATAATATTGGATT 168958 |||||| |||||||||||||| |||| | || ||||||||||||| |||||||| || Sbjct 125340 TTGTCAAATGTATCAAAGATCATGTGATATGGGTTTAGGAGTACCTTTTAATATTGCATC 125399 Query 168959 TTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGTAATTTGACGCCTGGAAAGTTTAT 169018 ||| | || || || | || | || ||| |||| || || | ||| | Sbjct 125400 CTATGCTTTATTGACTTGTATGATGGCACAAGTATGTGGATTGAAACCAGGTGATTTTGT 125459 Query 169019 TCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTTAAAGGTTCAATT 169078 ||| || ||| ||| ||| || ||||| || ||| ||||||| || || || ||||| Sbjct 125460 ACATTGTTGTGGTGATTGTCATGTCTATTCGAATCATATTGAACCATTGAAAGTACAATT 125519 Query 169079 GAAAAGAAAACC 169090 | ||||| || Sbjct 125520 AGAGAGAAATCC 125531 >seq54 Length=171999 Score = 86.0 bits (94), Expect = 8e-12 Identities = 176/254 (69%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 162998 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAA 163057 ||||||||||| || || ||| || || ||||| | | |||| | || || || Sbjct 166215 ATTAAGGTTGCACAGTTGGCTGGCTACGTAAGCGAACACAGCGCCTATCATCATGGAGAG 166156 Query 163058 CAAAATTTATGTGAAACTATAATTAAGTTTGCC-CAAGATTTTGTTGGTACAAATAATAT 163116 ||| ||| | | | ||||| | | || || | ||||| |||||||| | |||||||| Sbjct 166155 CAAGCTTTGTATAATACTATTAC-AGGTATGGCTCAAGACTTTGTTGGATCTAATAATAT 166097 Query 163117 AGCATTACTTGAACCTGA-TGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTG 163175 | | |||| | | || ||||||||||||||| ||| | |||||||| | ||| ||| Sbjct 166096 TCCTCT-CTTGTATCCGAGTGGTCAATTTGGTACAAGACTTCAAGGAGGTGACGATGCTG 166038 Query 163176 CGGCATCAAGATATATTTATACCAAACCAAATAAAAT-ATTAAAATATATATTTAGAGAA 163234 | | ||||||||| |||| || |||||| | | | ||| || |||| || Sbjct 166037 CAAGTGCCCGATATATTTTCACCAGACTAAATAAGTTGACTCGAAT-GATTTTTATGAAA 165979 Query 163235 GAAGATGACCCTAT 163248 |||||||| || || Sbjct 165978 GAAGATGATCCAAT 165965 >seq1 Length=149384 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 193482 CAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGT 193541 |||||||| ||||||||||| | ||| |||||| ||| |||| || || | |||| Sbjct 116492 CAAAAAGGTACTTGTGGTATCACTTACAGACAAGAGGATTTGCCTTTCACTCGTGAAGGT 116433 Query 193542 ATGGTACCAGATATTATTATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAA 193601 || || |||||||||||| | ||||| || |||||||| | ||||||||| ||| Sbjct 116432 ATTGTGCCAGATATTATTGTCAATCCGCATGCCATTCCATCTCGTATGACCATTGGTCAG 116373 Query 193602 ATTATTG 193608 | |||| Sbjct 116372 CTCATTG 116366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635173042600720