Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq157 120 4e-22 >seq157 Length=153911 Score = 120 bits (132), Expect = 4e-22 Identities = 337/500 (67%), Gaps = 23/500 (5%) Strand=Plus/Plus Query 180520 TTTAGATTCTTGTGGATT---TCATTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGG 180576 ||||||||| |||||| |||| | ||| ||| || ||||||||||| | ||||| Sbjct 125058 TTTAGATTCCATTGGATTGACTCATCGT-GAAGAGATGG--ATTTAGGACCAGTCTATGG 125114 Query 180577 ATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGC 180635 |||||||||||||||| || || || ||| || || |||| || ||| Sbjct 125115 ATTTCAATGGAGACATTGGGGTGCACACTATGAA-ACCATGCATACTAATTATTCTCAAA 125173 Query 180636 AAGGTATAGACCAATTAAGCCAAGT-TATAGAAACTATAAAAAATAATCC--CGAATGCC 180692 ||||||| || ||||| | |||| | | || || || | ||||| | ||| | Sbjct 125174 AAGGTATTGATCAATTGAAA-AAGTGTGTCGATACCATTCGTCACAATCCAACCAAT--C 125230 Query 180693 GAAGAATAATCATAGATAGTTGGAATGTATCACAATTACCAGATATGGCTCTTCCACCAT 180752 | ||||| || | | |||||||| ||| | ||||| | ||||| |||||||| | Sbjct 125231 GTAGAATTATTCTCTCTGCATGGAATGTTTCAGATTTACCTCAAATGGCACTTCCACCTT 125290 Query 180753 GTCACTGTTTGGTACAATTTTATGT---TAGAAATAAA-ATTTATTTAGATTGCCAATTG 180808 |||| | || ||||| | || || | ||| | | ||| || ||| ||| || Sbjct 125291 GTCATTTATTATGTCAATTCTGGGTGGATACAGATACACAAGAATTGAG-TTGTCAAATG 125349 Query 180809 TATCAAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTCATTT 180868 ||||||||||| ||| | || ||||| ||||| | ||||||||| | |||| | || Sbjct 125350 TATCAAAGATCATGTGATATGGGTTTAGGAGTACCTTTTAATATTGCATCCTATGCTTTA 125409 Query 180869 TTGGTATGTGTTCTCTCA-AAGT-GGTGCAATTTAACCCCTGGAAAATTTATTCACACTT 180926 ||| ||| | | || |||| ||| | || | || || | ||| | || || Sbjct 125410 TTGACTTGTATGATGGCACAAGTATGTGGA--TTGAAACCAGGTGATTTTGTACATTGTT 125467 Query 180927 TTGGGGATGTTCATGTATATTCTAACCATATTGACCAATTAAAAATTCAATTAAGCAGAA 180986 ||| ||| |||||| ||||| || |||||||| | ||| ||| | |||||| |||| Sbjct 125468 GTGGTGATTGTCATGTCTATTCGAATCATATTGAACCATTGAAAGTACAATTAGAGAGAA 125527 Query 180987 ACCCTTACAAGTTTCCAAAA 181006 | || | | ||||||||| Sbjct 125528 ATCCCAAACACTTTCCAAAA 125547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655275298366000