Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq42 86.0 1e-11 >seq42 Length=292872 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/132 (73%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || || || |||||||| | ||||| | ||||||||| ||| Sbjct 165904 ATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAA 165845 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| ||||||||||| |||| | ||| ||||||| ||||| ||||||| ||| | | Sbjct 165844 AGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTTGATTTAACGT 165785 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 165784 TTTCAATGGTAT 165773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903404718024640