Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq93 163 7e-35 seq36 120 7e-22 >seq93 Length=103736 Score = 163 bits (180), Expect = 7e-35 Identities = 504/768 (66%), Gaps = 30/768 (4%) Strand=Plus/Minus Query 131432 CTATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTC 131491 || || ||||| ||||||| | |||| || ||||| ||||| | | || | ||| Sbjct 85441 CTCTTCCCAATCGAACATCAAAAGGTTTGGGAGATGTACAAGAAGGCCATGGCATCTTTC 85382 Query 131492 TGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTG 131551 ||||||| |||||| | ||| | || |||||||| | | ||||||| | | Sbjct 85381 TGGACTGCTGAAGAAGTGGATCTCCACACAGATATTGCTCAATGGGAAACTCTCAATACC 85322 Query 131552 AATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTT 131611 |||||| || | || | | ||| | || ||||| || | ||||| ||||| Sbjct 85321 AATGAACAACACTTCATCAAGACTGTTTTGGCCTTCTTTGCTGCCTCCGATGGTATTGTG 85262 Query 131612 ATTGAAAATCT-TGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGTT 131670 | ||| || | ||| | ||||| || ||| || | |||||||||| | || || Sbjct 85261 AATGAGAACTTGTGTCAACAATTT-ATGGCTGAAGTTCAAATTCCTGAAGCCAGATGTTT 85203 Query 131671 CTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTGA 131730 ||| ||| ||| || |||| ||||||| |||||||||||| | ||||| Sbjct 85202 CTATGGATTCCAAATTGCCATTGAGAATATTCATGCAGAGATGTATTCAACTCTAATTGA 85143 Query 131731 GAGTCTTGTTAAAAATGAAGATGATAAAAATAAAT----TATTTGATGCTGTAAATAAAT 131786 | |||| | | | || | ||| | || | || |||| | ||| Sbjct 85142 AACCTACATTAA----GGACACGAGAGAAAGACATCGTCTCTTCAATGCCATTGATACTG 85087 Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 |||| | || ||||||| || |||||| | |||||||| ||| || | || Sbjct 85086 TTCCATCCGTTCAAAAGAAGGCTCGTTGGGCTTTGAAATGGAT-CAAC-----TCGGATA 85033 Query 131847 ATTTTTCTACAAGAC--TTG-TAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTG 131903 | || | | | || ||| | || ||||||||||| |||||||| |||||| || Sbjct 85032 ACTTGTTTGCTGAACGATTGATTGCCTTTGCTTGTGTGGAAGGTATCTTCTTTAGTGGAT 84973 Query 131904 CTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCA 131963 |||||||| | ||||||||| | |||||| | || |||||||||||| | | || |||| Sbjct 84972 CTTTCTGTTCCATCTTTTGGATGAAGAAGAGAGGTTTGATGCCTGGATTGACCTTCTCCA 84913 Query 131964 ATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTG-----CTATATTAATCTA 132018 || |||| || || ||||||||| ||| || || || |||| || | || || | Sbjct 84912 ATGAATTGATTTCTCGAGATGAAGGATTACACACGGACTTTGCTTGTCTCTTGTATTCCA 84853 Query 132019 T-AGAAAATTTGCTGATAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAG 132077 | |||| | | ||| | | |||| | | | | | | || ||||| | Sbjct 84852 TGCTCAAATATAC---CAAATTGCCTCAAAAGGTTGTACATTCATTGGTCAGTGAAGCTG 84796 Query 132078 TTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATG 132137 |||| || |||||||| || ||| |||| || | ||| | |||||||| |||||| Sbjct 84795 TTGAGATTGAGAAGGAATTCATTCGAGAATCTCTCCCTGTGGACTTGATTGGTATGAATT 84736 Query 132138 CT-GACTCTATGAAGGAGTACATTGAATTCGTTGCTGATCGTTTAATT 132184 || | ||| ||| | | ||||||||||| ||||||||||| ||| || Sbjct 84735 CTCGTCTC-ATGCAACAATACATTGAATTTGTTGCTGATCGATTACTT 84689 >seq36 Length=122865 Score = 120 bits (132), Expect = 7e-22 Identities = 505/786 (64%), Gaps = 11/786 (1%) Strand=Plus/Minus Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGT-ATTCATGGACATGATATTAA 110422 ||||| |||||||||||||| | ||||| | | |||| |||||||| |||||| | Sbjct 116293 GAACGACCTCAACACATGTTCATGCGTGT-GAGTTTGGGCATTCATGGTTCCGATATTGA 116235 Query 110423 AGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCTA 110481 | ||||||| || || || | || | | | | | || || || |||||| Sbjct 116234 GAAGGCTATTGAAACCTACGAATTACTTAGCACTG-GTATGTTCATCCACGCCTCTCCTA 116176 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | || || || || || ||| ||| || ||||||||| | | | || | Sbjct 116175 CTCTCTTCAATGCTGGTACTCCCACTCCTCAAATGAGTTCTTGCTTCTTAGTGGCCATGA 116116 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | || ||||| ||| ||||||||| ||| | || || ||| | || || || | Sbjct 116115 AAGACGATTCCATTTCAGGTATTTACGATACACTCAAGACGTGTGCCTTGATATCCAAGA 116056 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 |||| || || || | ||||||| | ||||| | ||| | | || | Sbjct 116055 GTGCTGGTGGTATCGGCTTGTCCGTTCATAACATTCGTGCCTCTGGATCCTACATTCGAG 115996 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 | | || || | || | |||||| |||| ||| | | || |||||||||||||| Sbjct 115995 GAACCAACGGAACCTCCAATGGACTCATTCCCATGCTTCGTGTATTCAACGACACTGCCC 115936 Query 110722 AATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTT 110778 || ||| ||||||||||| || |||| || | ||||| | ||| | || |||| Sbjct 115935 GTTACGTGGATCAAGGTGGTGGTAAACGAAAAGGAGCCTTTGCCGTTTATTTGGAGCCTT 115876 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 ||||||| ||||| ||||| || ||||| | | || ||| ||| || ||| Sbjct 115875 GGCATTCCGATATTTTTGATTTTTTAGATTTGAGAAAGAATACTGGAAAGGAGGAAATTC 115816 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 |||| || ||||| |||| | ||||| | ||||| || ||| | | || | | Sbjct 115815 GAGCTCGAGATTTGTTTTTGGGTTTGTGGGTGAATGATTTGTTTATGGAGAGAGTGAAGG 115756 Query 110899 A-AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATAT 110957 | | | ||| ||||| || | |||||| || ||||||| || ||||||| | Sbjct 115755 AGGATTCTCAT-TGGTCACTCTTTTGTCCTAATGAAGCTCCTGGACTTGCTGATGTGTGG 115697 Query 110958 GGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAA 111017 || |||||||| | || | || ||||| || || || ||| Sbjct 115696 GGTGAAGAGTTTAATGAATTGTATTTGCGTTATGAGAAGGAGGGTCGTGCACGCCGTGTC 115637 Query 111018 ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCT 111077 ||| |||||||| |||||||| ||| |||| ||||| |||| ||||| |||| Sbjct 115636 GTTCGTGCTCAAGAGCTTTGGTTTGCAATTATTGAGGCACAAATTGAGACTGGTGTTCCT 115577 Query 111078 TATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAAT 111136 || || | ||||| ||| ||| |||| | ||||| |||||| ||| | ||||| || Sbjct 115576 TACATGCTTTATAAGGATGCAT-GTAATAGAAAATCAAATCAACAAAATCTTGGAACGAT 115518 Query 111137 TAAGTC 111142 || || Sbjct 115517 CAAATC 115512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186804071733614