Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq42 127 1e-24 seq151 111 1e-19 seq82 109 4e-19 seq38 105 4e-18 seq120 104 2e-17 seq29 96.9 2e-15 seq76 95.1 8e-15 seq26 86.0 4e-12 >seq42 Length=292872 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | || ||||| || |||||| || ||||| |||||||| ||||| Sbjct 165711 ACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 165652 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| ||||||||||| || |||||||||||||| || ||||| | || Sbjct 165651 CAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGG 165592 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || |||| || | || | |||||| | ||||| | Sbjct 165591 AATTCCTTCCTTGTCTTGGATCTTGCTTTTC-ACGTTCTCAATCGTGTCGTTGGATTCGA 165533 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || ||||| || | || || || ||||| ||||| Sbjct 165532 CTTCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165484 Score = 116 bits (128), Expect = 2e-21 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAA-TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 || |||||||| | ||| | ||| || | ||| || ||||| |||||||| ||||| Sbjct 166166 CCTCCTCTCAATC-TAAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCGGA 166108 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | |||| ||||||||||| || |||||||||||||| || |||||| | || Sbjct 166107 GAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 166048 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| || ||| || | || | ||||||| | ||||| | Sbjct 166047 AATACCTTCCTTATCTTGAATCTTGCTCTTC-ACGTTTTCGATGGTGTCGTTGGATTCAA 165989 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || ||||| || | || || || ||||| |||||| Sbjct 165988 CTTCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATA 165939 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || ||||| | || || | || ||||| ||||||||| |||||||||||||| Sbjct 166395 ACCTCCCCTCAATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGA 166336 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || |||||||| || || || |||||||| | || || ||| | || Sbjct 166335 GAGGGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGG 166276 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || || | |||| || | ||| || | ||||| | Sbjct 166275 AATGCCTTCCTTATCTTGGATCTT-TGACTTGACATTCTCGATGGTATCATTGGATTCGA 166217 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || || || || ||||| |||||||| ||||| Sbjct 166216 CTTCCAATGTAATGGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 166168 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | || ||||| || | || |||||||| ||||||||||| || Sbjct 165939 ACCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGA 165880 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| || ||||| ||||||||||| || | | || || ||| | || Sbjct 165879 CAAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGG 165820 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || || ||| | || | ||| || | || || | Sbjct 165819 AATTCCTTCCTTGTCTTGGATCTT-TGATTTAACGTTTTCAATGGTATCATTGGACTCAA 165761 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || || || || || || ||||| || ||||| |||||| Sbjct 165760 CCTCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCATA 165711 >seq151 Length=76492 Score = 111 bits (122), Expect = 1e-19 Identities = 172/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | |||| ||| || ||||| || ||||||| || ||||| || Sbjct 51036 ACCACCTCTTAATCTCAACATCAAGTGAAGAGTTGCATCCTTTTGTACATTATAATCCGA 50977 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || |||||||| || || ||| ||||||||||||| ||||| || Sbjct 50976 TAAAGTTCTTCCATCCTCCAATTGCTTACCAGCATAAATCAAACGCTGTTGATCCGCTGG 50917 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || | | ||||||||| ||||| || | | ||| | || || | Sbjct 50916 AATACCTTCCTTATCTGTGACTTTCTGTTT-AACATTCTCAATTGAGTCATTGGACTCAA 50858 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGT 33760 | || | ||||||||| ||||||| | || || ||||| | ||||| |||| | | | Sbjct 50857 CATCCAATGTGATCGTTCTACCTGTAAGTGTCTTGACAAATAATTGCAT-GTTGTTTTTT 50799 Query 33761 TT 33762 || Sbjct 50798 TT 50797 >seq82 Length=211372 Score = 109 bits (120), Expect = 4e-19 Identities = 189/270 (70%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| |||||||| | || ||||| || | || || ||||| |||||||| || | Sbjct 147704 CACCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAG 147763 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | || | | || |||||||| ||||||||||| ||||| | || |||||| | | Sbjct 147764 ACAAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAG 147823 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||| ||||| ||| || || | |||| || | ||||||| | ||||| Sbjct 147824 GAATACCTTCCTTGTCTTGAATCTT-TGACTTGACATTCTCGATGGTGTCGTTGGATTCG 147882 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTG 33759 || || | ||||| || ||||| || || || || || || || ||||| || | || Sbjct 147883 ACCTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATTGT--GAATG 147940 Query 33760 TTTATCGCGCAATACTTTTTCAATTAAATT 33789 | || ||| || |||||||| ||||| Sbjct 147941 GTGATGGCG-TATTTTTTTTCAACAAAATT 147969 >seq38 Length=237352 Score = 105 bits (116), Expect = 4e-18 Identities = 172/243 (71%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || | |||||||| || ||||| || ||||||| |||||||| || Sbjct 109292 ACCACCACGTAATCTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCGA 109351 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || || ||||||||||| ||| |||||||||| || ||||| || Sbjct 109352 TAAAGTTCTTCCATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGG 109411 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || | ||||||||||| ||||| || | | ||| | || || | Sbjct 109412 AATGCCTTCCTTATCTGTGATTTTCTGTTT-AACATTCTCAATCGAGTCATTGGACTCAA 109470 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTG-TG 33759 | || | ||||| ||| ||||||| | ||||| || || | ||||| || ||| || Sbjct 109471 CATCCAATGTGATTGTTCTACCTGTAAGTGTTTTAACGAATAATTGCAT--TTTGTGTTG 109528 Query 33760 TTT 33762 ||| Sbjct 109529 TTT 109531 >seq120 Length=320511 Score = 104 bits (114), Expect = 2e-17 Identities = 169/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| | ||| |||||||| || || || ||||| | |||||| || ||| Sbjct 60817 CCACCTCTCAATCTTAAGACCAAATGAAGGGTAGCATCCTTTTGAACGTTGTAGTCAGAG 60876 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || |||||||| || || ||| | ||||||||||| ||||| || Sbjct 60877 AGTGTTCTTCCATCCTCCAATTGCTTGCCTGCATAGATCAAACGCTGTTGATCAGCTGGA 60936 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || | ||||| ||| |||| || | | ||| | || || || Sbjct 60937 ATTCCTTCCTTATCTGTGATTTTGCTCTTC-ACATTCTCAATCGAGTCATTAGACTCAAC 60995 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGTT 33761 || | ||||| ||| |||| || | ||||| ||||| | ||||| || || || | Sbjct 60996 CTCCAATGTGATAGTTCTACCAGTGAGTGTTTTGACAAATAGTTGCATGTTTCGTCTGAT 61055 Query 33762 T 33762 | Sbjct 61056 T 61056 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| | ||||||||| |||| ||| | | | || ||||||||||| || || || Sbjct 60625 TCTTTTTGCAAGTTGTAATCAGAGATTGTTCTTCCATCCTCCAATTGTTTGCCAGCGTAA 60684 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || ||||| || ||||| || | || ||||| || |||||||| ||| |||| Sbjct 60685 ATTAAACGTTGTTGATCGGCTGGAATTCCCTCTTTATCAGCAATTTTGCTCTTC-ACATT 60743 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | | |||| | || || || || | ||||| ||||| || ||||| ||||| || Sbjct 60744 CTCAATCGAGTCGTTGGACTCTACTTCCAATGTGATAGTTTTTCCAGTTAAGGTTTTCAC 60803 Query 33738 AAAGATCTGCAT 33749 ||| | ||||| Sbjct 60804 AAACAATTGCAT 60815 >seq29 Length=427163 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || ||||||||| || | | || | || ||||| || ||||| ||||||||||| Sbjct 49279 GTTACCACCTCTTAATCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATC 49220 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 ||| || || | | || |||||||| || || || ||||||||||| || |||||| | Sbjct 49219 GGAAAGGGTTCTGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGG 49160 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATT 33697 || | || || || || ||| || || | || | || | |||||| | |||| Sbjct 49159 TGGAATCCCCTCCTTATCTTGAATCTT-TGACTTGACGTTCTCGATTGTGTCGTTAGATT 49101 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || || ||||| || ||||| || || || ||||| Sbjct 49100 CAACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 49049 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| || ||||| |||||||| ||||| | || | | | || || ||||| Sbjct 48757 TGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCCATCTTCTAATTGC 48698 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||||||||| || | | || ||||| | || | ||||| ||||| || || Sbjct 48697 TTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTTG 48638 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| || | || | |||||| | ||||| || |||| ||||| || || || || Sbjct 48637 CTTTTC-ACGTTCTCGATTGTGTCGTTGGATTCGACTTCAAGAGTGATAGTCTTGCCAGT 48579 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 ||| || || || ||||| ||||| |||| || Sbjct 48578 TAAAGTCTTGACGAAGATTTGCAT-GTTGATG 48548 >seq76 Length=223365 Score = 95.1 bits (104), Expect = 8e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | || ||||| || |||||| || ||||| |||||||| || || Sbjct 84287 ACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGA 84346 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | || |||||||| || || ||||||||||| | || |||||| | || Sbjct 84347 CAATGTTCTGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGG 84406 Query 33642 CACACCTTCTTTGTC 33656 | |||||| ||||| Sbjct 84407 AATACCTTCCTTGTC 84421 >seq26 Length=133099 Score = 86.0 bits (94), Expect = 4e-12 Identities = 163/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || ||||| | ||||||||||| | || || || || | | ||||||| || Sbjct 73289 ACCTCCCCTCAATCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGA 73230 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || || ||||||||||| || |||||||| || || ||||| || Sbjct 73229 CAAGGTTCTTCCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGG 73170 Query 33642 CACACCTTCTTTGTCGGCAATTTT-CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | ||||| || ||||| ||||| || || || | || | | ||| | || || Sbjct 73169 AATCCCTTCCTTATCGGCTATTTTGCTCTT--GACGTTCTCGATCGAGTCATTGGACTCT 73112 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 || || | || || || ||||| || || ||||| |||||||| ||||| |||| Sbjct 73111 ACTTCCAAGGTAATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCAT-GTTG 73058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701700510080