Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq42 138 3e-27 seq29 132 1e-25 seq38 111 4e-19 seq82 107 5e-18 seq120 86.0 1e-11 >seq42 Length=292872 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || || || |||||||| ||| ||| || |||| Sbjct 166183 AAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAATGATACCATCGAGAAT 166242 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| ||| || ||| |||||| | || ||| Sbjct 166243 GTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAACAAAGATTGATTTTC 166302 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||||||||| || | ||||||||||| | || ||||||||| Sbjct 166303 GCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAACATTCAAAAAGAGTCT 166362 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||||||||||||||||||| Sbjct 166363 ACTCTTCACCTTGTTTTGAGA 166383 Score = 113 bits (124), Expect = 1e-19 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 |||||| ||||| || ||||||||| || ||| |||||||| ||||| |||||||| Sbjct 165795 AAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAACAAAGACTCATCTTTGCCGGAAA 165854 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| || ||||| ||||| || ||| | ||||||||| | || ||||| || || | || Sbjct 165855 GCAATTAGAAGACGGAAGAACCTTGTCTGATTACAACATTCAAAAAGAATCAACATTGCA 165914 Query 206373 CCTTGTTTTGAGACT 206387 | | ||||||||||| Sbjct 165915 CTTGGTTTTGAGACT 165929 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || || ||||||||||| ||| ||||| ||||| Sbjct 165954 CAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAACGACACCATCGAAAA 166013 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||||||||| || ||||| ||| || || ||| | | || || Sbjct 166014 CGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAACGTTTGATTTT 166073 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || |||||||| ||||| ||| | |||| |||||| | || || || || Sbjct 166074 TGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAACATTCAAAAGGAATC 166133 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || | ||||||||| | ||| Sbjct 166134 CACATTGCACCTTGTTCTTAGA 166155 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 |||||||||||||||||||||||||||||| || | || || || | | || ||||| Sbjct 166383 TCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAGAGGGTTCTTCC 166324 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||| || ||||| || | | |||||| Sbjct 166323 ATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTG 166285 >seq29 Length=427163 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | |||||||| || |||||||||||||| ||| | |||||| |||| Sbjct 49064 AAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTGAATCTAACGACACAATCGAGAAC 49123 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| || || || ||| || || ||| | | || ||| Sbjct 49124 GTCAAGTCAAAGATTCAAGATAAGGAGGGGATTCCACCAGATCAACAACGTTTGATTTTC 49183 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| || || | ||||||||||| |||| || || || Sbjct 49184 GCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACAACATCCAAAAGGAATCA 49243 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||||||||||||| ||||| Sbjct 49244 ACTCTTCACCTTGTTCTGAGA 49264 Score = 118 bits (130), Expect = 3e-21 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT--AAAGC 206251 || || || || |||||| | ||||| ||| |||||| |||| || ||||| Sbjct 48579 ACTGGCAAGACTATCACTCTTGAAGTCGAATCCAACGACACAATCGAGAACGTGAAAAGC 48638 Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311 || ||| ||||| || ||||||||| || || |||||||| ||||| ||||||| Sbjct 48639 AA--GATCCAAGACAAGGAAGGAATTCCACCTGATCAACAAAGACTCATCTTTGCCGGAA 48696 Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371 |||| || ||||||||||| || ||| |||| |||||| | || || || || ||||| | Sbjct 48697 AGCAATTAGAAGATGGAAGAACCTTGTCCGACTACAACATTCAAAAGGAATCCACTCTCC 48756 Query 206372 ACCTTGTTTTGAGACT 206387 ||||||| | ||||| Sbjct 48757 ACCTTGTCCTCAGACT 48772 >seq38 Length=237352 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || |||||||| ||||||||||| | || | |||||| | || |||||| Sbjct 109267 ACTGGAAAAACAATCACTTTGGAGGCAGAGATGAATGACACTATTGAGAGTGTAAAGAGT 109208 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||| ||||| || || ||| |||| |||||| ||||||| || || ||| Sbjct 109207 AAGATTTTTGAAAAGGATGGTATTCCTTCGGATCAACAAAGAATTATCTTTGCTGGTAAG 109148 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||| |||||||| |||||| ||| |||||| | || || || || ||||| ||| Sbjct 109147 CAATTGGAGGATGGAAGAACTTTGAGCGACTACAACATTCAAAAGGATTCCACTCTACAC 109088 Query 206374 CTTGTTTTGAGACT 206387 | ||||||||||| Sbjct 109087 TTGGTTTTGAGACT 109074 >seq82 Length=211372 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||||||||| || ||| ||||| |||| || ||| | Sbjct 147908 ACCGGTAAGACCATCACTTTGGAGGTCGAATCCAACGACACCATCGAGAATGTCAAGTCA 147849 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| ||| || || |||||| | ||||| ||||||||| Sbjct 147848 AAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATCTTTGCCGGAAAG 147789 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| || || ||| | || |||||| | || || || ||||| | ||| Sbjct 147788 CAATTGGAAGATGGCAGAACCTTGTCTGACTACAACATTCAAAAGGAATCTACATTGCAC 147729 Query 206374 CTTGTTTTGAGA 206385 | || |||||| Sbjct 147728 TTGGTCTTGAGA 147717 >seq120 Length=320511 Score = 86.0 bits (94), Expect = 1e-11 Identities = 150/213 (70%), Gaps = 14/213 (7%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCT--GACACAGTCGA-- 206240 ||||| | || |||||||| ||||| |||||||| || || | ||| | | || Sbjct 60800 AAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGA--GTCCAACGACTCGATTGAGA 60743 Query 206241 ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT-- 206298 || | | ||||||| || || ||||| |||||| || | || |||| || | Sbjct 60742 ATGTGAAGAGCAAAA--TTGCTGATAAAGAGGGAATT---CCAGCCGATCAACAACGTTT 60688 Query 206299 -ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || | ||| || || || ||||| |||||||| || | | ||||||||| | || || Sbjct 60687 AATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACAACTTGCAAAA 60628 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || || |||||||||| ||||||||||| Sbjct 60627 AGATTCGACCATTCACCTTGTGTTGAGACTTCG 60595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181812108446654