Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_026016.1 Length=43748 Score E Sequences producing significant alignments: (Bits) Value seq565 390 3e-104 >seq565 Length=3067 Score = 390 bits (432), Expect = 3e-104 Identities = 234/245 (96%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 1748 GTTGAGTTACTAGGTAAAATGTATAAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCA 1807 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3067 GTTGAGTTACTAGGTAAAATGTATAAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCA 3008 Query 1808 TCTTATGTAATTAATGGTCCTGGTAAAACTAATGAATATGCATACTAATAGTAGTTACAT 1867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3007 TCTTATGTAATTAATGGTCCTGGTAAAACTAATGAATATGCATACTAATAGTAGTTACAT 2948 Query 1868 AAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGC 1927 ||| ||||||| | | ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2947 AAAGCAAAAGGTGGCTTTTTTTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGC 2888 Query 1928 CAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACCGCTTATTCTAT 1987 |||||||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||| Sbjct 2887 CAAACCTTTATATA--TAATTATCAAACTGCGCTAAAATTACCAAAACTGCTTATTCTAT 2830 Query 1988 TACCT 1992 ||||| Sbjct 2829 TACCT 2825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139871046597480