Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq120 143 2e-29 seq42 125 6e-24 seq82 120 3e-22 seq29 118 9e-22 seq151 98.7 9e-16 seq36 84.2 2e-11 >seq120 Length=320511 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| ||||||| ||||| ||||| |||||| | ||||| | ||||| || ||||| Sbjct 60815 ATGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAAC 60756 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || | || ||| | || || |||||| | ||||||||||| || || ||||||| Sbjct 60755 GACTCGATTGAGAATGTGAAGAGCAAAATTGCTGATAAAGAGGGAATTCCAGCCGATCAA 60696 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | ||||||| ||||||||| | || |||| |||| || |||||||| Sbjct 60695 CAACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACAAC 60636 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | |||||||| || |||||||| | ||||| ||| | | ||||||| Sbjct 60635 TTGCAAAAAGATTCGACCATTCACCTTGTGTTGAGACTTCGTGGAGGAA 60587 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 ||||||||| | ||||| |||||| | || || | | | ||||| | || || || | Sbjct 61046 AACATGCAACTATTTGTCAAAACACTCACTGGTAGAACTATCACATTGGAGGTTGAGTCT 60987 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || | || ||| | || || ||||| || ||||| || || || || | ||| Sbjct 60986 AATGACTCGATTGAGAATGTGAAGAGCAAAATCACAGATAAGGAAGGAATTCCAGCTGAT 60927 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || || | | || || | ||||| ||| | || |||| |||| || || ||| Sbjct 60926 CAACAGCGTTTGATCTATGCAGGCAAGCAATTGGAGGATGGAAGAACACTCTCTGACTAC 60867 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||||| || | ||| ||||||| || |||||||||||||| |||| Sbjct 60866 AACGTTCAAAAGGATGCTACCCTTCATTTGGTCTTAAGATTGAGAGGTGGAA 60815 >seq42 Length=292872 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| || || || || | || || | ||||||||| |||| Sbjct 166168 ATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAAT 166227 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || || ||| || ||||| || || || || || || || Sbjct 166228 GATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAA 166287 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| || || || ||| | ||||||| |||| || ||||||||| Sbjct 166288 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAAC 166347 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| || || |||| | || || |||||||| ||||| Sbjct 166348 ATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGG 166394 Score = 102 bits (112), Expect = 7e-17 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 25170 ACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAG 25229 |||| |||||| | || || || || | || || || | ||||| ||||||||||| Sbjct 165479 ACAAGATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAAT 165538 Query 25230 CCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 ||||||| || || ||| | || ||| || || || || || || || || || | Sbjct 165539 CCAACGACACGATTGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTG 165598 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGA 25347 |||| ||| | | |||| | || |||||| | ||||| | |||| |||| ||| Sbjct 165599 ATCAACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTC--CGA 165656 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || ||||| |||||||| | || || || || ||||||||||| || Sbjct 165657 CTACAACATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 165710 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || || | || || | ||||| ||| ||||| Sbjct 165940 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAAC 165999 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| ||||| || ||||| || || ||||| Sbjct 166000 GACACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 166059 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | || |||||| | ||||| | |||| | || ||| ||||| Sbjct 166060 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAAC 166119 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| |||||||| | || | || | |||||||||||||||| Sbjct 166120 ATTCAAAAGGAATCCACATTGCACCTTGTTCTTAGATTGAGAGGAGGAA 166168 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| || |||||||| | || || | || || || |||| Sbjct 165712 ATGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAAT 165771 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| ||| || || || || || || || || || || Sbjct 165772 GATACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 165831 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||||||||||| | | ||| || ||| | ||||| | |||| |||| ||||||| Sbjct 165832 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTC--TGATTACA 165889 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | |||||||||||||| || | || || || || ||| | ||||| || Sbjct 165890 ACATTCAAAAAGAATCAACATTGCACTTGGTTTTGAGACTCAGAGGTGG 165938 >seq82 Length=211372 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || ||||| || | ||||| | || |||||| ||||| Sbjct 147932 ATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAAC 147873 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || ||| ||| || || || ||||| || || ||||| Sbjct 147872 GACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 147813 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 |||||| | || | | ||| || ||| | ||||||| |||| |||| | | |||| Sbjct 147812 CAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTG--ACTACA 147755 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | |||||||| ||||| || | || || || || |||||||||||||| Sbjct 147754 ACATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGG 147706 >seq29 Length=427163 Score = 118 bits (130), Expect = 9e-22 Identities = 149/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 |||||||||| | || || || || ||||| || || | ||||| | ||||||||| | Sbjct 48551 CAACATGCAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATC 48610 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 |||||| || |||||| | || ||| || || || || || || || || || || Sbjct 48611 CAACGACACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGA 48670 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGAT 25348 ||| ||||||||||| | | ||| || ||| | ||||||| |||| |||| ||| Sbjct 48671 TCAACAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTC--CGAC 48728 Query 25349 TACAATATTCAAAAAGAATCCAC 25371 ||||| |||||||| |||||||| Sbjct 48729 TACAACATTCAAAAGGAATCCAC 48751 >seq151 Length=76492 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 ||||||||||||| | ||||| || ||| | || || | | ||||||| | || || || Sbjct 50802 AAACAACATGCAATTATTTGTCAAGACACTTACAGGTAGAACGATCACATTGGATGTTGA 50861 Query 25228 AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 |||| || | || ||| | || ||||| ||| | || ||||| || ||||| || | Sbjct 50862 GTCCAATGACTCAATTGAGAATGTTAAACAGAAAGTCACAGATAAGGAAGGTATTCCAGC 50921 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGA 25347 ||||| || | | ||||| | || || ||| | || |||| |||| | | || Sbjct 50922 GGATCAACAGCGTTTGATTTATGCTGGTAAGCAATTGGAGGATGGAAGAACTTTATCGGA 50981 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||| | ||||| || | || |||| || |||| ||||| ||||| || Sbjct 50982 TTATAATGTACAAAAGGATGCAACTCTTCACTTGATGTTGAGATTAAGAGGTGG 51035 >seq36 Length=122865 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/92 (80%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 137959 AAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCGATATAGACGGCCATAGCTCCT 138018 ||||| |||||| ||||||||| | |||||||||||| | ||| ||||| | |||||| Sbjct 115845 AAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTCCAAATAAACGGCAAAGGCTCCT 115904 Query 138019 TTTCTTTT---ACCGCCTTGATCCACATGACG 138047 |||| ||| ||| ||||||||||| | ||| Sbjct 115905 TTTCGTTTACCACCACCTTGATCCACGTAACG 115936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445091206447680