Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq42 109 4e-19 seq26 109 4e-19 seq38 104 2e-17 seq120 102 7e-17 seq82 100 2e-16 seq29 87.8 1e-12 >seq42 Length=292872 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||||||||| |||||||||||||||||||| ||||| ||| || Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | || || ||| || || || |||||| | || || || Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||||| | |||| || || || ||||| |||||| | ||| | ||||||||| Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| |||||||| ||||| || || | || ||||| || | ||||| Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGG 166394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || |||||||| ||||| || ||||||||||| | || || || Sbjct 165712 ATGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAAT 165771 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||| || ||||| ||||| | || || ||| Sbjct 165772 GATACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 165831 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| || || | ||| || || ||||||||||| | ||| || ||||||||| Sbjct 165832 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTACAAC 165891 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 || ||||||||||| ||| | || || || ||||| Sbjct 165892 ATTCAAAAAGAATCAACATTGCACTTGGTTTTGAG 165926 >seq26 Length=133099 Score = 109 bits (120), Expect = 4e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 106254 TTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAA 106313 || || |||||||| ||||| ||||| |||||||| |||||||||||| ||||| ||| Sbjct 73056 TTCAACATGCAAATCTTTGTGAAAACCTTGACTGGTAAGACCATTACCTTGGAAGTAGAG 73115 Query 106314 CCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTT 106373 || || || | | | || || ||||| ||||| || ||||| | || | Sbjct 73116 TCCAATGACTCGATCGAGAACGTCAAGAGCAAAATAGCCGATAAGGAAGGGATTCCAGCC 73175 Query 106374 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGAT 106433 ||||||||| | | |||| || || ||||||||||| ||| | ||| || ||| Sbjct 73176 GATCAACAACGATTGATTTTCGCAGGAAAACAATTAGAGGATGGAAGAACCTTGTCTGAT 73235 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||| | | || || || ||||| | ||||| || ||||| || | ||||| Sbjct 73236 TACAGCGTTCAGAAGGATTCTACCTTGCATTTGGTGTTGAGATTGAGGGGAGG 73288 >seq38 Length=237352 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 ||||||||| | || ||||||||| | || || | || || || |||| || || Sbjct 109522 AAAATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGTCC 109463 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 || || ||| | || ||||| ||||| | || || |||||| | || | |||| Sbjct 109462 AATGACTCGATTGAGAATGTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTGAT 109403 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | | |||||||| || ||||||||||| ||| | |||| | |||||| Sbjct 109402 CAACAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAGAACTTTATCGGATTAC 109343 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||| || |||| || || || || ||||| ||||| || || Sbjct 109342 AATGTACAAAAGGATGCTACTCTTCACTTGGTGTTGAGATTACGTGGTGG 109293 >seq120 Length=320511 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||| | ||||| ||||| || ||||| || || || || ||||| ||| || Sbjct 60816 AATGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAA 60757 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | ||||| |||||||| || ||||| || | || | ||||| Sbjct 60756 CGACTCGATTGAGAATGTGAAGAGCAAAATTGCTGATAAAGAGGGAATTCCAGCCGATCA 60697 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | | ||||| || ||||||||||| || ||| | ||| || |||||||| Sbjct 60696 ACAACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACAA 60637 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 | | |||||||| || || | || | || ||||| | || |||||| Sbjct 60636 CTTGCAAAAAGATTCGACCATTCACCTTGTGTTGAGACTTCGTGGAGGA 60588 >seq82 Length=211372 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| ||||| || ||||| || |||||||| || |||| ||| || Sbjct 147933 AATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAA 147874 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | || || ||| ||| ||||| ||||| | || ||||| Sbjct 147873 CGACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 147814 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||||| | || | ||| || || ||||| |||||| | ||| || || ||||| Sbjct 147813 ACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAA 147754 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| ||||| ||||||||| | || || || ||||| || ||||||| Sbjct 147753 CATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGG 147706 >seq29 Length=427163 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || |||||||| || || || || || ||||||||||| || || | ||| ||| || Sbjct 48552 AACATGCAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATCC 48611 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| | | | | |||||| || || ||||| ||||| | || |||| Sbjct 48612 AACGACACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGAT 48671 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||||| || || | ||| || || |||||||||||| | ||| || ||| ||| Sbjct 48672 CAACAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGACTAC 48731 Query 106437 AACATACAAAAAGAATCTACACTACA 106462 ||||| ||||| ||||| || || || Sbjct 48732 AACATTCAAAAGGAATCCACTCTCCA 48757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402326785452992