Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq82 125 6e-24 seq42 113 4e-20 seq29 109 5e-19 seq38 102 7e-17 seq26 95.1 1e-14 seq76 86.0 6e-12 >seq82 Length=211372 Score = 125 bits (138), Expect = 6e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 || ||||| ||||| || || ||| ||||||||||||||||| || | |||||||| Sbjct 147715 AATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTG 147774 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 | || |||| ||||| || ||||| ||||| | || || || | ||||| | ||| Sbjct 147775 CCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCC 147834 Query 35639 TTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTG 35698 ||||| |||||| ||| | | | | | |||||| | ||||| ||||||| ||| Sbjct 147835 TTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGACCTCCAAAGTG 147894 Query 35699 ATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || || ||||| ||||| || || || || || |||||| || Sbjct 147895 ATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATTGTG 147936 >seq42 Length=292872 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 || ||||| || | || | ||| ||| ||||||||||||||||||| | ||||| Sbjct 166385 AATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAGAGGGTTCTT 166326 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 | || |||| |||||||| || || ||||| | || ||||| | ||||| || ||| Sbjct 166325 CCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCC 166266 Query 35639 TTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTG 35698 || || ||||||| ||| | | | | | || || | ||||| || |||| || Sbjct 166265 TTATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACTTCCAATGTA 166206 Query 35699 ATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || || || ||||||||||| ||||| || ||||||| Sbjct 166205 ATGGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCATTC 166166 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 ||||| ||||| || || || || ||||||||||||||||| | |||||||| || Sbjct 165926 CTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTTCCG 165867 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || || | ||||| || ||||| || | | || ||||| | |||| | |||||| Sbjct 165866 TCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTG 165807 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || ||||||| || | || | | || || | || || ||||| | || || Sbjct 165806 TCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAACCTCAAGAGTAATG 165747 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || ||||| ||||| || || || ||||| Sbjct 165746 GTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| |||| | |||| |||| |||| || ||||| ||||| Sbjct 166130 TCCTTTTGAATGTTGTAGTCGGAGAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAA 166071 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || || || | |||| | ||||| || ||||| ||||| || Sbjct 166070 ATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTGCTCTTCACGTTT 166011 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | ||||| || |||| || || || ||||| || | || || || Sbjct 166010 TCGATGGTGTCGTTGGATTCAACTTCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGACG 165951 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 165950 AAGATTTGCAT 165940 >seq29 Length=427163 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| ||||||||||||| | ||||| | || |||| |||||||| || || Sbjct 49239 TCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCATCTTCCAATTGCTTACCAGCGAAA 49180 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || || || | |||| | |||||| || |||||| ||| | | Sbjct 49179 ATCAAACGTTGTTGATCTGGTGGAATCCCCTCCTTATCTTGAATCTTTGACTTGACGTTC 49120 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | ||||| || |||| ||||| || || || |||||||||||||| Sbjct 49119 TCGATTGTGTCGTTAGATTCAACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTCACG 49060 Query 35726 AATATCTGCATTC 35738 || || ||||||| Sbjct 49059 AAAATTTGCATTC 49047 >seq38 Length=237352 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | | ||||| ||||| |||| || ||||||||||||||||| ||| Sbjct 109063 TTCCACCTCTGAGTCTCAAAACCAAGTGTAGAGTGGAATCCTTTTGAATGTTGTAGTCGC 109122 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| |||| | || |||| |||||||| ||||| || | | || || ||||||| Sbjct 109123 TCAAAGTTCTTCCATCCTCCAATTGCTTACCAGCAAAGATAATTCTTTGTTGATCCGAAG 109182 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||| || | ||||| ||| | | | | | ||||| || || Sbjct 109183 GAATACCATCCTTTTCAAAAATCTTACTCTTTACACTCTCAATAGTGTCATTCATCTCTG 109242 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| ||||| ||||| || || |||||| ||||||| | ||||| Sbjct 109243 CCTCCAAAGTGATTGTTTTTCCAGTTAAAGTTCTCACAAAGAGTTGCAT 109291 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| ||||||||||| || | ||| |||||||| | |||||||| | Sbjct 109293 CCACCACGTAATCTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCGAT 109352 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || || | || || || ||| | ||||| || || || || | ||| Sbjct 109353 AAAGTTCTTCCATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGGA 109412 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| || |||| || || || | | | | | || ||| | || || || Sbjct 109413 ATGCCTTCCTTATCTGTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGACTCAACA 109472 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTG 35742 |||| ||||| ||| |||| || | ||||| || |||| |||||| |||| Sbjct 109473 TCCAATGTGATTGTTCTACCTGTAAGTGTTTTAACGAATAATTGCATTTTGTG 109525 >seq26 Length=133099 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 || |||||||||||||| || ||| ||||| |||| | ||||||| | |||||||| Sbjct 73279 AATCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGACAAGGTTCTT 73220 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 | || || | || || || || || ||||| || || || || | |||| | ||| Sbjct 73219 CCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGGAATCCCTTCC 73160 Query 35639 TTGTCCATGATCTTTTGCTTCAGA-GTT-GCCACCGTGTCGCTCGATTCCACCTCCACCG 35696 || || | | ||||||| || ||| | | || ||| | || || || |||| | Sbjct 73159 TTATC--GGCTATTTTGCTCTTGACGTTCTCGATCGAGTCATTGGACTCTACTTCCAAGG 73102 Query 35697 TGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || ||||| ||||| ||||||||||| || ||||| Sbjct 73101 TAATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCAT 73062 >seq76 Length=223365 Score = 86.0 bits (94), Expect = 6e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35496 TCATCTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAA 35555 || ||| || || ||||| | || ||||| ||||| || | || |||||||||| Sbjct 84274 TCTTCTTCTTCTTACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAA 84333 Query 35556 TGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCT 35615 ||||||| || | ||| |||| | || |||| |||||||| ||||| ||||| | | Sbjct 84334 TGTTGTAGTCAGACAATGTTCTGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTTT 84393 Query 35616 GCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCA 35660 | || || | ||||| | |||||||| ||||||| ||||| Sbjct 84394 GTTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGACTTCA 84438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450790365555920