Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq13 116 5e-21 >seq13 Length=365397 Score = 116 bits (128), Expect = 5e-21 Identities = 358/551 (65%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 161114 TACGGGGATTTGACTGACTCCCTGAACATAGTCTCTATCATTAAGGAAGTAGAACCTGAT 161173 || || || ||||| || || ||| || | || |||||| || | | || ||| Sbjct 116240 TATGGAGACTTGACCGATACCGGAAACTTAATTTCCATCATTGCCAAAATTAAGCCAGAT 116181 Query 161174 GAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATAT 161233 || || ||||| | | || || |||||||||||| ||| || ||||||||| Sbjct 116180 GAAATTTACAATTTGGCTGCTCAATCTCATGTGAAAGTCAGTTTTGAAATGCCTGAATAT 116121 Query 161234 ACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGT 161293 || || | ||||| | | || || || | | ||||| ||| ||||| | || Sbjct 116120 ACTGCTAATGTTGATGGTATTGGTACTTTACGTTTGTTGGAAGCAATTCGTGCCTGTGGA 116061 Query 161294 ATG--ACAGATAGGGTCCGTATCT-ACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTA 161350 || | ||| | || || | | || || || ||||| ||||| || | || Sbjct 116060 TTGGAAAAGAAAA---CCAAATTTTATCAAGCCAGTACAAGTGAATTGTACGGTCTAGTG 116004 Query 161351 CAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCT 161410 |||||| || || || ||||||||||| ||||| || || || ||||||| | || Sbjct 116003 CAAGAGGTTCCTCAAAAGGAAACAACACCATTCTATCCTCGTTCACCATATGCCTGTGCC 115944 Query 161411 AAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGT 161470 ||| | || | ||||||||||| ||||| ||||| ||| ||| || Sbjct 115943 AAATTGTACAGCTATTGGATTGTTGTTAACTATAGAGAAGCTTACAACATGTTTGCATTG 115884 Query 161471 AGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAG 161530 | ||||||| | |||||||| || || || || ||| || || || ||| | ||| Sbjct 115883 AATGGTATTTTGTTCAACCACGAATCGATTCGTCGTGGTCCAACATTTGTGACCAGAAAG 115824 Query 161531 ATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAAT 161590 || || | || | ||||||| | || | || |||||| | || | ||||| Sbjct 115823 ATCACCATGGCTGTTGCCCGTATAAAACTTGGTTTGCAAGATTGTTTGTATTTGGGTAAC 115764 Query 161591 CTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATG 161650 | | | | ||||||||||||||||| | || ||||| || || |||||| | ||| Sbjct 115763 TTGGATGCTGAAAGAGATTGGGGTCATGCTAAGGATTATGTTGAAGCCATGTGGCTCATG 115704 Query 161651 TTACAACAGGA 161661 ||||| || || Sbjct 115703 TTACAGCAAGA 115693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729924362755120