Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq36 293 3e-74 seq93 199 5e-46 >seq36 Length=122865 Score = 293 bits (324), Expect = 3e-74 Identities = 1216/1895 (64%), Gaps = 84/1895 (4%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || || ||||||| || || |||| ||| | | ||| ||||| || || |||| Sbjct 114504 GTGAATTGAATGGCATCGGCAGCTGGTTGTGTTCTCAAATAATACATTCCAGTCTTCAAT 114563 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || |||||| | || || ||||| | | |||||| |||| ||| ||| Sbjct 114564 CCCTTACTCCAAGCATAAAAGTGCATGGAAGACATTTTGGAGATGGATGGAGTGGCAATA 114623 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 | ||| | |||||| |||||| ||||| | |||| || || | | | Sbjct 114624 AAGACATTGAGTGATTGAGATTGATCAATGAATGGAGCTCTCTCAATGGCAAGATCCAAC 114683 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 | ||||||||| |||||||||| |||||| | | | || ||||||||||||| Sbjct 114684 AAACTCTTTTGTTTGATTTCCCAAACAGTCTTGTACAATTCCTTAATATCATCTGGAATT 114743 Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | |||||||| || || | | || |||||| |||| || | |||| Sbjct 114744 CCAGCAATGTTTTGAATAGAACCTCTGTTGGCAATAATTTGATTCACAATATTTGAATTC 114803 Query 68671 CACAATTTTCTC-------TCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAA 68723 |||| ||| | || | | | |||| ||| |||| | | || | Sbjct 114804 CACA---TTCCCAAACGAATCAAGTCAGATACTAA----ATGTCTGTTAATGACTGGATA 114856 Query 68724 TTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 68783 ||| ||| || || | | || || | ||| || ||||| || | | ||||||| Sbjct 114857 TTCACCACTCAAGACACGTCTCGTATACACATTCGAAGTGTATGGCTCAAAACATTCATT 114916 Query 68784 ATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 68843 ||| |||| ||||||| || |||||||||||||| || || || | ||||||||| | Sbjct 114917 ATTACCCAAAATTTGACTGGTGGATGCAGTTGGCATTGGAGCAACAAGTAAACTATTACG 114976 Query 68844 AAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCA-------------AA 68890 || |||| | | | |||| | | | | | || ||||||||| | Sbjct 114977 AACTCCATATTTGAGAATTTCTTGTCTCAAACCTTCCCAATCCCATCTTCCACTCGTGAT 115036 Query 68891 GATC--------AGATGGTACAACATTC------CAAAGATCGTATTGTAGAATTCCGTT 68936 |||| | | ||| || | ||| |||| || | ||| | |||||| | Sbjct 115037 GATCTTTCCTTCAAAAGGTTCACCTTTCATGGTCCAAAATTCATGTTGGAAAATTCCTCT 115096 Query 68937 ACTTGCATATGA--TCCATTATATGTTTCATAAGGTCCTTCCTGT-TCAGCTAGTTCACA 68993 ||| ||| || ||| | ||| || |||||||||||||| ||| | || | |||||| Sbjct 115097 ACT--CATTGGACTTCCTTGATAGGTCTCATAAGGTCCTTC-TGTCTTGGCAACTTCACA 115153 Query 68994 ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTT-ATTGAGA-TCTTGT 69051 ||| || |||||| | |||| |||||||||||||| |||| ||| | | ||||| Sbjct 115154 ACTGGCTGTCAATGCAGCAAAATATATTGTTTCGAAAAT-TTCTCGATTCAAAATCTTG- 115211 Query 69052 GCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACC 69111 |||||| ||| ||||| ||| ||| | ||||| ||||| |||||||||||||| Sbjct 115212 GCTTCTTCACTCTCGAAGGGAAGATGCATCTTGATAAAGGCATCGGCCAATCCCTGAACA 115271 Query 69112 CCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTC-AGCTTCTGGAATAGGATAATA 69170 || | ||| || || | ||||||| |||| ||||| |||||| || |||||||| Sbjct 115272 CCCAAACCAATGGGACGATGTCTCATATTACT-CTTTCTAGCTTCCTCAACTGGATAATA 115330 Query 69171 ATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTC---CTTTAG 69227 ||| | || || || || || | ||| | | | ||| || | || | | | Sbjct 115331 ATTCTTGTCAATGATCTTGTTCAAATTCTTGGTGGCAATTTTGACAATTTCAAACAATTG 115390 Query 69228 TT--TGA--GAAAAT-CAAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCT 69282 || ||| | | | | ||||| || | ||| || | ||||| | | ||| Sbjct 115391 TTCATGATCGTAGGTACGTGTCGTC--TCATTGACATACTTTGGAAGTGCAATACTTGCC 115448 Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 | ||||| || ||||| |||| | | || |||| || || || ||||| | || Sbjct 115449 AAGTTACACACAGCTACTTCATCTGGAGCTGTGTATTCAATAATTTCAGTACACAAGTTG 115508 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 ||||||| || || |||||||| ||||| ||| | ||||| || ||||| ||| Sbjct 115509 GAGGATTTGATCGTTCCAAGATTTTGTTGATTTGATTTTCTATTACATGCATCCTTATAA 115568 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA 69462 || || | ||| |||||| ||||| || | || ||||| | ||||| | | Sbjct 115569 AGCATGTAAGGAACACCAGTCTCAATTTGTGCCTCAATAATTGCAAACCAAAGCTCTTGA 115628 Query 69463 GCATTTATTACG-GTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAA 69521 ||| | || | | || | || ||| || ||||| | ||| | | || Sbjct 115629 GCACGAACGACACGGCGTGCA-CGACCCTCCTTCTCATAACGCAAATACAATTCATTAAA 115687 Query 69522 TTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACAC 69581 || || ||||| |||||| | | ||||||| |||||| ||||| | | |||||| Sbjct 115688 CTCTTCACCCCACACATCAGCAAGTCCAGGAGCTTCATTAGGACAAAAGAGTGACCAATG 115747 Query 69582 ATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATC 69641 | ||| ||||| |||| | |||||| | ||| | ||| | | | | ||| | ||| Sbjct 115748 AGAATCCTCCTTCACTCTCTCCATAAACAAATCATTCACCCACAAACCCAAAAACAAATC 115807 Query 69642 TCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATC 69701 || | || | |||| || ||||| ||||| ||| | | ||| | ||| || | |||||| Sbjct 115808 TCGAGCTCGAATTTCCTCCTTTCCAGTATTCTTTCTCAAATCTAAAAAATCAAAAATATC 115867 Query 69702 AGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATC 69761 |||||||| || || | ||| | || | | |||| ||||||| || || ||||| Sbjct 115868 GGAATGCCAAGGCTCCAAATAAACGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGATC 115927 Query 69762 TATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACC 69821 | ||| | |||||||| || | || | ||||| ||||| | ||||| || | || Sbjct 115928 CACGTAACGGGCAGTGTCGTTGAATACACGAAGCATGGGAATGAGTCCATTGGAGGTTCC 115987 Query 69822 ATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCC 69881 || ||||| ||| || ||| || ||||| ||| || || | || || || Sbjct 115988 GTTGGTTCCTCGAATGTAGGATCCAGAGGCACGAATGTTATGAACGGACAAGCCGATACC 116047 Query 69882 TCCTGCCATTTTAGAGATTAGAGCACAACGT-TTCAATGTGTCATATATACCCTCTATGC 69940 || || | || || || | ||||| ||| || | ||| || || ||||| ||| Sbjct 116048 ACCAGCACTCTTGGATATCAAGGCACA-CGTCTTGAGTGTATCGTAAATACCTGAAATGG 116106 Query 69941 TATCATCTATCATGT----TAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 ||| ||| ||||| ||||||| || | || ||||||| || ||| || Sbjct 116107 AATCGTCTTTCATGGCCACTAAGAAGCAAGAA-CT---CATTTGAGGAGTGGGAGTACCA 116162 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA---AAGCAGATTGTAT 70053 ||||| || | |||||||| ||||| ||||| | ||| ||| | | ||| Sbjct 116163 GCATTGAAGAGAGTAGGAGAGGCGTGGATGAACA---TACCAGTGCTAAGTAATTCGTAG 116219 Query 70054 GTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATA 70113 ||||||||||| || ||||| | |||||| || | |||||||| ||||| Sbjct 116220 GTTTCAATAGCCTTCTCAATATCGGAACCATGAATGCCCAAACTCACACGCATGAACATG 116279 Query 70114 TGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTT 70173 || ||||||||||| | | || | ||| | || ||| | |||| ||||| Sbjct 116280 TGTTGAGGTCGTTCGGCAATAACATCTCCGAGTTTGAGCAAGTAGCTTCTTTCAAGAGTC 116339 Query 70174 TTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTC 70208 ||||| ||||| || | | || | | |||| ||| Sbjct 116340 TTAAAGCCAAAGTAATCGAATTGATAATCTCGTTC 116374 >seq93 Length=103736 Score = 199 bits (220), Expect = 5e-46 Identities = 399/585 (68%), Gaps = 10/585 (2%) Strand=Plus/Plus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 |||| || ||||||| | ||| ||||| || || || || | ||||||||| | ||| Sbjct 84882 TGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCAGGCATCAAACCT 84941 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 | ||| || | |||||| |||| | ||||||||| ||||||||| ||||| || Sbjct 84942 CTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATACCTTCCACACAA 85001 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAACTTGT-ATCATTATGTATCCACTTCTGTGCCCA 39810 ||||| |||| | || || | ||| || ||| | ||||| ||| ||||| Sbjct 85002 GCAAAGGCAATCAATCGTTCAGCA-AACAAGTTATCCGAGTTGATCCATTTCAAAGCCCA 85060 Query 39811 ATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTC 39870 | ||| ||||| | || | || | || || || ||||| |||||| |||| |||| Sbjct 85061 ACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGAGACGATGTCTTTC 85120 Query 39871 ATCAC-TATCTTTAACATATGTATCTATTAACAGACT---ATACATTTCTGAATGGATGT 39926 || | | || |||| || || || |||| || | |||||| |||| ||| || | Sbjct 85121 -TCTCGTGTCCTTAATGTAGGTTTCAATTA---GAGTTGAATACATCTCTGCATGAATAT 85176 Query 39927 TTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAAC 39986 | ||||| || || || ||||| || |||||||| ||||||| |||||| || || | Sbjct 85177 TCTCAATGGCAATTTGGAATCCATAGAAACATCTGGCTTCAGGAATTTGAACTTCAGCCA 85236 Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 |||| || ||| || |||||||| || ||||| || ||||| || ||||| | Sbjct 85237 TAAATTGTTGACACAAGTTCTCATTCACAATACCATCGGAGGCAGCAAAGAAGGCCAAAA 85296 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || || || || | || ||||| || | | | | ||| | | |||||| | Sbjct 85297 CAGTCTTGATGAAGTGTTGTTCATTGGTATTGAGAGTTTCCCATTGAGCAATATCTGTGT 85356 Query 40107 ATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATA 40166 | ||| ||||||||||| ||||| || || ||| ||||| |||||||| | ||| | Sbjct 85357 GGAGATCCACTTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTCTTGTACATCTCCCAAA 85416 Query 40167 TATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 | ||| || ||||| || | ||| || | || |||||||| Sbjct 85417 CCTTTTGATGTTCGATTGGGAAGAGAACGAAACGATGTGGATTTT 85461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903871429360