Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq93 206 2e-48 seq57 132 4e-26 >seq93 Length=103736 Score = 206 bits (228), Expect = 2e-48 Identities = 590/896 (66%), Gaps = 22/896 (2%) Strand=Plus/Minus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 |||||||| | | || || | || ||||| || |||| | | ||| | |||||| Sbjct 85462 GAAAATCCACATCGTTTCGTTCTCTTCCCAATCGAACATCAAAAGGTTTGGGAGATGTAC 85403 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804 || || || ||| || || ||||| || |||||||| ||| | | ||| | || Sbjct 85402 AAGAAGGCCATGGCATCTTTCTGGACTGCTGAAGAAGTGGATCTCCACACAGATATTGCT 85343 Query 43805 CATTGGATTGCATTAAA-ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTT 43863 || ||| | | || |||| | ||| |||| || || |||||||| || || Sbjct 85342 CAATGGGAAACTCTCAATACCA-ATGAACAACACTTCATCAAGACTGTTTTGGCCTTCTT 85284 Query 43864 TGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA 43923 |||||| ||| || || || ||||| || ||| | | ||| | |||||||| Sbjct 85283 TGCTGCCTCCGATGGTATTGTGAATGAGAACTTGTGTCAACAATTTATGGCTGAAGTTCA 85224 Query 43924 ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGA 43983 | | || ||||| ||||||| ||||| || ||||||||||| || ||||||||| | || Sbjct 85223 AATTCCTGAAGCCAGATGTTTCTATGGATTCCAAATTGCCATTGAGAATATTCATGCAGA 85164 Query 43984 AATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA---AG-CATCGAT 44039 ||||| ||| || || || ||||| || || ||||||| || ||||| Sbjct 85163 GATGTATTCAACTCTAATTGAAACCTACATTAAGGA----CACGAGAGAAAGACATCGTC 85108 Query 44040 TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAAT 44099 | || ||||| || || || || || | || || | || || ||||| | |||| Sbjct 85107 TCTTCAATGCCATTGATACTGTTCCATCCGTTCAAAAGAAGGCTCGTTGGGCTTTGAAAT 85048 Query 44100 GGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCA 44159 |||| || || || | | |||| |||||| | | || ||||| ||||||||| | Sbjct 85047 GGATCAACTCGGATAACTTGTTTGCTGAACGATTGATTGCCTTTGCTTGTGTGGAAGGTA 84988 Query 44160 TTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTG 44219 | |||||| ||||| || |||| |||||| | ||||| ||||||||||||||| Sbjct 84987 TCTTCTTTAGTGGATCTTTCTGTTCCATCTTTTGGATGAAGAAGAGAGGTTTGATGCCTG 84928 Query 44220 GGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTT 44279 | ||||| || || ||||| || || ||| |||||||| ||||| || ||||||| Sbjct 84927 GATTGACCTTCTCCAATGAATTGATTTCTCGAGATGAAGGATTACACACGGACTTTGCTT 84868 Query 44280 G---CTTGTTACTTGGAT-ATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGAT 44335 | ||||| || || || | | || | | | ||| || |||| Sbjct 84867 GTCTCTTGT--ATTCCATGCTCAAATATACCAAATTGCCTCA---AAAGGTTGTACATTC 84813 Query 44336 ATTGTT--GTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAA 44393 |||| | || || || || |||| || | ||||| || | | | | ||||| Sbjct 84812 ATTGGTCAGT-GAAGCTGTTGAGATTGAGAAGGAATTCATTCGAGAATCTCTCCCTGTGG 84754 Query 44394 ATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTT 44453 | || || || |||||| | | | ||| | ||||| ||||||| |||| ||||| | Sbjct 84753 ACTTGATTGGTATGAATTCTCGTCTCATGCAACAATACATTGAATTTGTTGCTGATCGAT 84694 Query 44454 TACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGG 44513 ||||| | | || | ||||| || |||| ||||| || || |||| ||| Sbjct 84693 TACTTGTCTCGATAGGATATGATAAGGTTTACCTTGTCCAAAATCCATTCGATTGGATGA 84634 Query 44514 AAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATAT 44569 | | ||||| || || || || ||||| ||||| || | ||||| |||||| Sbjct 84633 ATATGATTTCAGTGTCTGGTAAGACGAACTTCTTTGAGAAGAGAGTTGGTGAATAT 84578 >seq57 Length=415752 Score = 132 bits (146), Expect = 4e-26 Identities = 267/391 (68%), Gaps = 10/391 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || |||||| | ||||| ||||| || |||| |||||||| |||||||| |||||||| Sbjct 209324 CCAAAAATTATCAATGGACCTGAGATTCTAAACAAATATGTTGGTCAATCAGAAGAAAAC 209265 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAA-AGTTC 19547 | || | || |||| || ||| ||| | || || |||| | | || Sbjct 209264 ATCAGAAAGCTTTTCTCTGATGCAGAAAGTGAATACAA-CGAAAAGGGAGATGACAGCCA 209206 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGT 19607 | ||| | | || | || |||||||| ||||| || || ||| | ||| ||| Sbjct 209205 ACTCCACTTACTTATTTTTGACGAATTGGATGCAATTTGCAAACAACGTGGTACTGTAAG 209146 Query 19608 AAATGGA------GTACATGACACTGTTGTCAATCAACTCCTGT-CAAAATTAGACGGTG 19660 | |||| ||||| ||| | ||||||||||| | || ||| ||| ||||||| Sbjct 209145 AGATGGTACAGGTGTACAAGACTCCATTGTCAATCAATTGTTGAGCAAGATT-GACGGTG 209087 Query 19661 TTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACA 19720 |||| |||| ||||||||| |||| || |||||||| ||| |||| | ||||| Sbjct 209086 TTAATTCTTTGAACAATATTTTAATTATCGGTATGACTAACAGATTGGACATGTTAGACG 209027 Query 19721 GCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAAT 19780 || || ||||| || || | || || || | || || ||| ||||| |||||| Sbjct 209026 AAGCATTGTTACGTCCTGGAAGATTTGAGGTACAAATGGAGATTGGTTTACCTGATGAAA 208967 Query 19781 GTGGACGTGTGGAAATTTTAAACATACATAC 19811 ||||||| || |||||||||| || || || Sbjct 208966 ATGGACGTTTGCAAATTTTAAAGATTCACAC 208936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453219546870