Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq42 116 3e-21 seq36 107 2e-18 seq29 104 2e-17 seq26 89.7 4e-13 >seq42 Length=292872 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| | ||| ||||| || | || || || ||||| || ||||||||| | Sbjct 165710 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 165651 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||||| | |||||||| || |||| | ||| |||||||| || || Sbjct 165650 AAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGGA 165591 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| |||||| | | || | ||||| ||| ||| ||| Sbjct 165590 ATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCGACT 165531 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| |||| || || || || || || || ||||||||||| Sbjct 165530 TCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165484 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27045 TGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGT 27104 || || || || || |||||||| ||||||||| | | | ||||||| | ||| Sbjct 166142 TGCAATGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCTTCCGTCTTCCAATTGT 166083 Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || |||| | ||| |||||||| || || | ||| || ||||| |||||| Sbjct 166082 TTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTG 166023 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 | |||| | |||| | ||||| ||| ||||||||| | ||| || | || || || Sbjct 166022 CTCTTCACGTTTTCGATGGTGTCGTTGGATTCAACTTCCAAAGTAATTGTCTTACCAGTG 165963 Query 27225 AGAGTTTTCACAAAGATTTGCATA 27248 || || || || |||||||||||| Sbjct 165962 AGGGTCTTGACGAAGATTTGCATA 165939 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||| ||||| || || || || ||||||||||| ||||| || || | | | |||| Sbjct 165924 CAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTTCCGTC 165865 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | || || ||||| | ||||| | ||||| || || || | || || || || Sbjct 165864 TTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTC 165805 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 |||||| ||| | | |||| | || || ||| ||||| || ||||| || | Sbjct 165804 TTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAACCTCAAGAGTAATGGT 165745 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||| ||||| || |||||||||||| Sbjct 165744 CTTTCCGGTCAAGGTTTTAACGAAGATTTGCATA 165711 >seq36 Length=122865 Score = 107 bits (118), Expect = 2e-18 Identities = 188/273 (69%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 |||| || |||||||||||| |||||| || | | |||| ||||| |||| | Sbjct 115761 ACTCTCTCCATAAACAAATCATTCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATT 115820 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGT 131767 || || | || || | ||| |||||| |||||| || ||||| || | |||||| || Sbjct 115821 TCCTCCTTTCCAGTATTCTTTCTCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGC 115880 Query 131768 TCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACC 131824 |||||||| || || | || ||||| || || ||| ||||||| || | ||| | Sbjct 115881 TCCAAATAAACGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCA 115940 Query 131825 ATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTA 131884 ||| |||| |||| || | |||||| | || |||| | |||| ||||| | | Sbjct 115941 GTGTCGTTGAATACACGAAGCATGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGA 116000 Query 131885 ATGTAGCTGCCATTGGCTCTGATTTTGTGAACG 131917 |||||| ||| ||| | || || |||||| Sbjct 116001 ATGTAGGATCCAGAGGCACGAATGTTATGAACG 116033 >seq29 Length=427163 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||| ||||||||| || | | | | ||||| | || || ||| Sbjct 48751 GTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCCATCTTCTAATTGCTTTCCG 48692 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | |||||||| || || | || || || || ||||||| ||||| Sbjct 48691 GCAAAGATGAGTCTTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGCTTTTC 48632 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| ||| ||||| ||||| |||| ||||| || | ||| Sbjct 48631 ACGTTCTCGATTGTGTCGTTGGATTCGACTTCAAGAGTGATAGTCTTGCCAGTTAAAGTC 48572 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 48571 TTGACGAAGATTTGCAT 48555 >seq26 Length=133099 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| | ||| |||||||| || ||||| || || |||| |||| || | Sbjct 73288 CCTCCCCTCAATCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGAC 73229 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | || || | ||||| || ||| |||| | || |||||||| | || Sbjct 73228 AAGGTTCTTCCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGGA 73169 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || |||||||| || ||| | || | | | || | | ||| ||| || ||| Sbjct 73168 ATCCCTTCCTTATCGGCTATTTTGCTCTTGACGTTCTCGATCGAGTCATTGGACTCTACT 73109 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || || |||| |||||||||||||||||||| Sbjct 73108 TCCAAGGTAATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCAT 73062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931427318288